Detailed information NTG1126940

Bioinformatically predicted

Overview

• Name: pilC
• Type: Machinery gene
• Locus tag: FGL10_RS07565
• Genome accession: NZ_LR590477
• Coordinates: 1428417..1431461 (+)
• Length: 1014 a.a.
• NCBI ID: WP_003710813.1
• Uniprot ID: -
• Organism: Neisseria lactamica strain NCTC10617
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type	MGE coordinates	Gene coordinates	Relative position	Distance (bp)
IScluster/Tn	1432046..1436649	1428417..1431461	flank	585

Gene organization within MGE regions

Location: 1428417..1436649

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
FGL10_RS07565 (NCTC10617_01319)	pilC	1428417..1431461 (+)	3045	WP_003710813.1	PilC family type IV pilus tip adhesin	Machinery gene
FGL10_RS07580 (NCTC10617_01320)	-	1432046..1433002 (+)	957	WP_003711642.1	IS110 family transposase	-
FGL10_RS07585 (NCTC10617_01321)	porB	1433137..1434150 (-)	1014	WP_036470733.1	trimeric porin PorB	-
FGL10_RS07595 (NCTC10617_01322)	truA	1434488..1435291 (-)	804	WP_003711606.1	tRNA pseudouridine(38-40) synthase TruA	-
FGL10_RS07600 (NCTC10617_01323)	-	1435693..1436649 (+)	957	WP_003711642.1	IS110 family transposase	-

Sequence

Protein

• Length: 1014 a.a.
• Molecular weight: 108728.84 Da
• Isoelectric Point: 8.8148

>NTDB_id=1126940 FGL10_RS07565 WP_003710813.1 1428417..1431461(+) (pilC) [Neisseria lactamica strain NCTC10617]
MPSGHRENKRKENDMKKTPKRHLLRHTAVYTAMLLAVSSQQAFGVGDTANFNFIVNDDGSVKGDQTPGGKGVRTGKKETF
PIGSSTRPGRNICRELGIKFDATQGCPFFAATTYELTYANTDTLLAGKNGGKLILGGGSAPLWGKVSGLDADNMAGRKTD
SWLTTVHKGKMGYDFTGLSCFLKGLGVSTGQSRQCPDLPFQFFFDFTNSALDSTSVGTSSDGLPIYKLTDHPWLGVSFQL
ALSDGKTPENWLAIQRDHTEVSKMITQPTGERSKGQVFALRAKLHMLGNSGSLNAQEIKLGEISMPNFAFMPHNENGNGR
TATIYKVREQGHIDVKLQLPSIGAGGCTRAQYTAAGPDGSQYAIVAPAPLGAGFPGGAAAVVTDPKSASSRILFYTLDKN
NKKNGGADYLPSKGFTEPVFAGRKAAIRLANGVSLSDSNINGITNGTFGIGDNGNNQQEWKDVLLRWTDRRDGNDNQFNY
FNNAIDASTRGKLYSQQYRIRDNGKRDLGDIVNSPVTAVGDYLATAANDGMVHIFKKSGGGYNLKLSYIPGTMPRKDLDN
QDSDLAKDLHNFANENYTGGLYGVDGGFVLRQYKDRVFMFGAMGQGGKGAYALDLTKAESNQTGVSLFDVKNGENGATLG
YTVGTPQIGKTHDGKYAAFLASGYATKDINSGDNQTALYVYDLESNGTLIKKIDVPGGKGGLSSPTLVDTDLDGTVDIAY
AGDRGGKMYRFDLGGNDPTRWSARAIFNGTKPITSAPAISQLKDKRVVIFGTGSDLTEEDVASQDIQHVYGIFDNDTDSL
PAEDGLGKGLLEQVLTKDGSTLFLSDYKRSDGSGDKGWVVKLQPGQRVTVKPTVVLRTAFVTIRNYNANGCGAETAFLGI
NTADGGKLTKKSARPVVPDNRVAKKVGEKKDAKGNNIPVGCMEKGTETVCPSGYVYPKLLTASYLDSQKTSDHPTTADGD
AGGSGNDNTPFQKSGNRCFFSKGVHTLLMNDMSDLDVAGPICNMKRVSWREVFF

Nucleotide

• Length: 3045 bp

>NTDB_id=1126940 FGL10_RS07565 WP_003710813.1 1428417..1431461(+) (pilC) [Neisseria lactamica strain NCTC10617]
ATGCCGTCCGGCCATCGGGAAAACAAACGGAAGGAAAACGATATGAAAAAAACACCCAAACGGCACTTGCTCCGCCATAC
TGCGGTTTATACCGCGATGCTCTTGGCGGTATCGTCCCAACAGGCGTTCGGCGTGGGCGATACTGCAAATTTCAATTTTA
TCGTCAACGACGACGGCAGCGTAAAAGGCGATCAGACACCCGGCGGCAAGGGCGTACGCACGGGTAAGAAAGAAACTTTC
CCAATCGGAAGCTCTACACGCCCGGGAAGAAACATATGTAGGGAACTGGGTATCAAATTTGATGCCACACAAGGGTGTCC
CTTTTTCGCCGCAACAACTTATGAACTCACCTACGCAAATACCGACACGCTGCTTGCGGGCAAGAACGGTGGGAAGCTGA
TTCTCGGCGGCGGTTCCGCCCCGCTGTGGGGCAAAGTTTCCGGGCTTGATGCCGACAATATGGCGGGGCGCAAAACCGAC
AGTTGGCTGACGACCGTCCATAAAGGGAAGATGGGTTACGATTTTACCGGCTTGAGTTGCTTCCTCAAGGGCTTGGGTGT
CTCGACGGGTCAAAGCCGCCAGTGTCCCGACCTGCCCTTCCAGTTTTTTTTCGACTTTACCAATAGCGCGCTCGACTCCA
CATCGGTGGGAACCAGTTCAGACGGCCTGCCGATATACAAGCTGACAGACCATCCGTGGCTGGGCGTTTCCTTCCAATTA
GCTTTATCGGATGGGAAAACGCCGGAAAACTGGCTCGCCATTCAGAGAGACCATACCGAAGTCAGCAAAATGATTACCCA
GCCGACAGGGGAAAGAAGCAAGGGTCAAGTATTCGCCCTGCGCGCCAAACTGCATATGCTGGGCAACTCCGGCAGCCTCA
ACGCCCAAGAAATCAAGCTGGGCGAGATTAGTATGCCCAACTTCGCCTTTATGCCGCATAACGAAAACGGCAATGGGCGG
ACAGCAACTATATATAAGGTACGCGAACAAGGCCATATCGACGTAAAACTCCAGCTTCCCAGCATAGGCGCGGGCGGCTG
TACGCGGGCGCAATATACCGCCGCCGGCCCGGACGGCAGCCAATACGCCATTGTCGCCCCAGCCCCTTTGGGCGCGGGTT
TCCCGGGCGGTGCTGCGGCGGTCGTTACCGATCCCAAGTCGGCAAGCAGCCGCATCCTCTTTTACACCTTGGATAAAAAC
AATAAGAAAAACGGCGGCGCGGATTATCTGCCAAGCAAAGGTTTTACCGAACCCGTCTTTGCCGGACGCAAGGCGGCAAT
CCGCTTGGCAAACGGCGTATCCTTGAGCGACAGCAATATTAACGGCATTACGAATGGCACATTCGGTATCGGCGATAATG
GGAATAATCAGCAAGAATGGAAAGACGTGTTATTGCGCTGGACCGACAGGCGCGATGGAAACGACAATCAGTTTAACTAT
TTTAACAATGCGATAGATGCCTCAACACGCGGCAAACTGTATAGCCAGCAATACCGCATCCGCGACAACGGCAAACGCGA
TTTGGGCGACATCGTCAACAGCCCGGTAACGGCGGTCGGCGACTATCTGGCAACCGCCGCCAACGACGGGATGGTGCATA
TCTTCAAAAAAAGCGGCGGCGGCTACAATCTGAAGCTCAGCTACATCCCCGGCACGATGCCGCGCAAAGATTTGGATAAC
CAAGATTCCGATTTGGCAAAAGACCTGCACAATTTTGCCAACGAAAACTACACGGGCGGTTTGTACGGCGTGGACGGCGG
CTTTGTCTTGCGCCAATACAAAGATCGCGTGTTTATGTTCGGCGCGATGGGTCAGGGCGGCAAAGGCGCGTATGCCTTGG
ATTTGACTAAAGCCGAAAGCAATCAGACCGGCGTTTCCCTGTTTGATGTGAAGAATGGAGAGAATGGCGCAACATTAGGC
TACACCGTCGGTACGCCGCAAATCGGCAAAACCCACGACGGCAAATACGCCGCCTTCCTCGCTTCCGGTTATGCGACTAA
AGATATTAACAGCGGCGATAATCAAACCGCGCTGTATGTGTATGATTTGGAAAGCAACGGTACGCTGATTAAAAAAATCG
ATGTACCCGGCGGCAAGGGCGGACTTTCGTCCCCAACGCTTGTCGATACGGATTTGGACGGCACGGTCGATATCGCCTAT
GCCGGCGATCGCGGCGGCAAGATGTACCGCTTTGATTTGGGCGGCAACGATCCGACCAGATGGTCTGCACGCGCCATTTT
CAACGGCACGAAGCCGATTACTTCCGCGCCCGCCATTTCCCAACTGAAAGACAAACGCGTCGTCATCTTCGGCACGGGCA
GCGATTTGACCGAAGAAGATGTGGCAAGCCAAGACATCCAACACGTTTACGGTATCTTTGATAACGATACGGATTCTTTG
CCGGCAGAAGACGGTTTGGGCAAAGGGCTGCTTGAGCAAGTGCTGACAAAAGACGGCAGTACGCTGTTCTTGAGCGACTA
CAAAAGGTCTGACGGCTCGGGCGATAAGGGCTGGGTAGTGAAATTGCAGCCCGGACAGCGCGTTACCGTCAAACCGACCG
TGGTATTGCGTACCGCCTTTGTAACCATCCGCAACTACAATGCCAACGGCTGCGGCGCGGAAACGGCATTTTTGGGCATC
AATACCGCCGACGGCGGCAAGCTGACGAAGAAAAGCGCGCGCCCCGTCGTACCGGATAACCGCGTGGCAAAAAAAGTCGG
CGAGAAAAAAGACGCGAAAGGCAACAATATCCCCGTGGGCTGTATGGAAAAAGGCACTGAAACCGTCTGCCCGAGCGGAT
ATGTTTATCCGAAACTGCTGACCGCAAGCTATTTGGACAGCCAAAAAACAAGCGATCACCCGACAACGGCAGACGGCGAC
GCGGGCGGCAGTGGCAATGACAACACCCCCTTCCAAAAATCCGGCAACCGTTGCTTCTTCAGCAAAGGCGTGCACACGCT
GCTGATGAACGATATGTCCGACTTGGACGTTGCCGGCCCGATCTGCAATATGAAACGGGTAAGCTGGCGCGAAGTCTTCT
TCTAA

Domains

Predicted by InterproScan.

• Neisseria PilC beta-propeller domain (T4P_PilY1) (520-826)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilC	Neisseria meningitidis A1493	49.441	100	0.524