Detailed information    

insolico Bioinformatically predicted

Overview


Name   recC   Type   Machinery gene
Locus tag   FGL10_RS06130 Genome accession   NZ_LR590477
Coordinates   1173596..1176805 (-) Length   1069 a.a.
NCBI ID   WP_003706990.1    Uniprot ID   D0W6F6
Organism   Neisseria lactamica strain NCTC10617     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context


Location: 1168596..1181805
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FGL10_RS06120 (NCTC10617_01064) mtrC 1171388..1172644 (-) 1257 WP_003706988.1 multidrug efflux RND transporter periplasmic adaptor subunit MtrC -
  FGL10_RS06125 (NCTC10617_01065) mtrR 1172892..1173524 (+) 633 WP_003706989.1 multidrug efflux system transcriptional repressor MtrR -
  FGL10_RS06130 (NCTC10617_01066) recC 1173596..1176805 (-) 3210 WP_003706990.1 exodeoxyribonuclease V subunit gamma Machinery gene
  FGL10_RS06135 (NCTC10617_01067) - 1176907..1178316 (-) 1410 WP_003706991.1 PepSY-associated TM helix domain-containing protein -
  FGL10_RS06145 (NCTC10617_01068) ccoP 1178662..1179993 (-) 1332 WP_003706993.1 cytochrome-c oxidase, cbb3-type subunit III -
  FGL10_RS06150 (NCTC10617_01069) - 1180017..1180187 (-) 171 WP_003706994.1 CcoQ/FixQ family Cbb3-type cytochrome c oxidase assembly chaperone -
  FGL10_RS06155 (NCTC10617_01070) ccoO 1180192..1180803 (-) 612 WP_002212596.1 cytochrome-c oxidase, cbb3-type subunit II -

Sequence


Protein


Download         Length: 1069 a.a.        Molecular weight: 120667.19 Da        Isoelectric Point: 4.7153

>NTDB_id=1126934 FGL10_RS06130 WP_003706990.1 1173596..1176805(-) (recC) [Neisseria lactamica strain NCTC10617]
MFYLYQSNRLETLAALFARIQKVKPLKSALQPEQIIVQSQGMRRYLNTCLARDLGVAANLSFSLPAGLTWKLMKKLIPGI
PELSPFAPEVIRWRLLDLFRSEAFRNTAEFEDVRNVLQDYLGSGESADYQLAGQLADIFDQYLVYRPQWIDAWQQGRLIG
LGDDEIWQSKLWRYLDDGRQSAPHRVALWEKLLESLSSDKLPERYFVFGISTMAPMYLQLLHKLSEHCDVFVFALNPSGM
YWGNVIEAAQILKGGGDPDLTQAGHPLLASLGKQGRDFFDFLNEMEIEEETPVFEEGGRDTLLHALQTDIQNLKMPSETA
GSVNTGDGSIRIVSAHSPLRELQILKDKLLKILHEHPDWQPHDIAVLTPNIEPYTPFIEAVFGQAQPGAQALPYSVSDVK
ISRRQPFFYALECLFDLLESRFEVDKVLALLETAPVLRRFGLTEDDLPLLHDMVADLNVHWGLDGEMRGGTDRLFTWKQA
VERMILGWMLPEGGNPMWQDVSAWYADVNQTDLFGRFAAFIETLSDIARIWRQPATVGEWVARCRDLLEILFQTGADDQK
AVQNLENEWVKWQEESTLAGFVGQLPPHTVIRHIRRFLDSESEAGFLRGGITFCSMVPMRSLPFKVICLLGLNDGDFPRN
TKAAVFDLIAKHPAKGDRARRDDDRYLFLEALISAREILYLSYIGRDIRKDEELAPSSLLGELIDTVAAMAGIGSRQLAQ
NWIEQHPLQAFSRRYFQEGGRSDGIFGTRTDYAAALGQTPEPPQPFFDQSVENAEPVAEIGQDEFIRFWRNPVKVWLQQQ
LAWSEPHIGEAWEPAEPFEPQHADQIAEAYIEARREGQDFSQTAARIVAESLLPSGELGRLWQQDFQTAAKQIDTAVLNS
PKLPPLSYAIPLDGQILKGSLSNLYQCGQVFYDYGKPNAPQRIAFLLEHLIFCAVMPSEAETRQTFIVQSGETEILAEIA
QDRALQLLSEWMAFFNIGQNRPLPFFAKTSLAAAEAFAQKQDWEAALKKAQTAYHGNKVSKGQKDYTEVALVFGNASQNP
LEQPLFENLVRLLADTLAAAEKREGAGEA

Nucleotide


Download         Length: 3210 bp        

>NTDB_id=1126934 FGL10_RS06130 WP_003706990.1 1173596..1176805(-) (recC) [Neisseria lactamica strain NCTC10617]
ATGTTTTATTTGTATCAATCCAACCGTCTTGAAACGCTGGCGGCACTGTTTGCCCGCATTCAAAAAGTCAAACCGCTGAA
ATCGGCTTTACAGCCCGAACAGATTATTGTGCAGAGTCAGGGGATGCGCCGCTACCTCAATACCTGCCTCGCCCGCGATT
TGGGCGTGGCGGCGAATTTGTCGTTCAGCCTGCCCGCCGGCCTGACGTGGAAGCTGATGAAAAAACTGATTCCCGGTATT
CCGGAACTCAGCCCGTTTGCGCCCGAAGTGATACGCTGGCGGCTGCTGGATTTGTTCCGCAGCGAGGCATTCCGGAATAC
GGCAGAATTTGAAGATGTGAGGAATGTGCTGCAAGACTATCTGGGCAGCGGCGAATCGGCGGATTATCAGCTTGCGGGAC
AGCTTGCGGACATATTCGACCAATACCTCGTGTACCGTCCTCAGTGGATAGACGCTTGGCAGCAGGGCAGGCTGATCGGT
TTGGGCGACGACGAAATCTGGCAGTCCAAACTGTGGCGTTACCTCGACGACGGCAGGCAGAGCGCGCCGCACCGTGTCGC
GTTGTGGGAAAAGCTGTTGGAGTCTTTGAGCAGTGATAAGCTGCCCGAGCGTTATTTCGTGTTCGGCATTTCCACGATGG
CGCCGATGTATCTGCAGCTTTTGCACAAGCTGTCCGAACATTGCGATGTGTTCGTGTTCGCACTCAATCCGAGCGGGATG
TATTGGGGCAACGTCATCGAAGCGGCGCAAATCCTCAAAGGCGGCGGCGATCCCGATTTGACTCAGGCGGGGCATCCGCT
GCTCGCTTCATTGGGCAAGCAGGGGCGCGACTTTTTCGACTTTTTGAACGAAATGGAAATAGAAGAAGAAACGCCGGTAT
TTGAAGAAGGCGGGCGCGATACGCTTTTGCACGCCCTGCAAACCGATATTCAAAACCTGAAAATGCCGTCTGAAACGGCG
GGAAGCGTCAACACGGGCGACGGCTCGATACGCATCGTCTCCGCACACAGCCCTTTGCGCGAATTGCAGATACTCAAAGA
CAAGCTGTTGAAAATTCTGCATGAACATCCCGATTGGCAGCCGCACGACATCGCCGTATTAACCCCGAATATCGAACCCT
ATACGCCTTTTATCGAAGCCGTGTTCGGACAGGCGCAGCCCGGCGCGCAGGCATTGCCGTATTCCGTTTCGGACGTGAAA
ATCAGCCGCCGACAACCGTTTTTTTATGCATTGGAATGCCTGTTCGACTTGTTGGAAAGCCGATTTGAAGTCGATAAAGT
GCTCGCGCTTTTGGAAACCGCCCCCGTGTTGCGCCGTTTCGGACTGACTGAGGACGATTTGCCGCTTTTGCACGATATGG
TTGCCGATTTGAACGTTCACTGGGGTTTGGACGGAGAAATGCGCGGCGGCACGGATCGGCTGTTCACCTGGAAGCAGGCG
GTAGAACGCATGATATTGGGCTGGATGCTGCCCGAAGGCGGCAATCCGATGTGGCAGGATGTCAGCGCGTGGTATGCCGA
CGTGAACCAAACCGACCTGTTCGGACGTTTTGCCGCCTTTATCGAGACCCTGTCGGATATTGCCCGGATATGGCGGCAGC
CCGCGACGGTCGGCGAATGGGTGGCGCGTTGCCGGGATTTGCTTGAAATATTGTTCCAAACCGGGGCCGATGACCAAAAG
GCAGTCCAAAACCTCGAAAACGAATGGGTCAAATGGCAGGAAGAGAGTACTCTGGCTGGGTTCGTCGGACAGTTGCCGCC
GCACACCGTCATCCGCCACATCCGCCGCTTCCTCGACAGCGAAAGCGAAGCAGGCTTTTTACGCGGCGGCATCACCTTTT
GCAGTATGGTGCCGATGCGGAGCCTGCCTTTTAAAGTCATCTGCCTGCTGGGTTTGAACGACGGAGATTTTCCCCGCAAT
ACCAAAGCCGCCGTATTCGACCTGATTGCCAAACATCCTGCCAAAGGCGACCGCGCCCGCCGCGACGACGACCGCTACCT
GTTCCTCGAAGCCCTCATCAGCGCGCGCGAGATCCTCTACCTGTCCTACATCGGGCGCGATATCCGCAAAGACGAAGAGC
TTGCCCCGTCTTCGCTGTTGGGCGAACTCATCGATACCGTTGCCGCTATGGCGGGCATCGGTAGCCGCCAACTTGCACAA
AATTGGATAGAACAGCATCCGCTGCAAGCCTTCTCGCGCCGATATTTCCAAGAAGGCGGACGTTCAGACGGCATATTCGG
CACGCGTACCGACTACGCCGCCGCGCTCGGACAAACGCCCGAACCGCCACAACCCTTTTTCGACCAATCCGTAGAAAACG
CCGAACCCGTTGCCGAAATCGGACAGGACGAATTTATCCGCTTCTGGCGCAATCCCGTCAAAGTATGGCTTCAGCAGCAG
CTTGCGTGGAGCGAACCCCATATCGGCGAAGCTTGGGAGCCTGCCGAACCCTTCGAGCCGCAACACGCCGATCAAATCGC
CGAAGCCTACATCGAAGCACGGCGCGAAGGACAAGATTTTTCCCAAACCGCCGCCCGCATCGTTGCGGAAAGCCTGCTGC
CGTCGGGAGAGTTGGGCAGACTTTGGCAGCAGGACTTCCAAACCGCTGCCAAACAAATCGACACGGCGGTTTTAAACAGC
CCCAAACTGCCACCGCTTTCATACGCCATACCGTTGGACGGACAAATCCTGAAAGGCAGTTTGAGCAATTTATACCAATG
CGGACAAGTGTTTTACGACTACGGCAAACCCAATGCGCCGCAACGTATCGCTTTTCTGCTGGAACACCTGATATTTTGCG
CCGTTATGCCGTCTGAAGCCGAAACGCGGCAAACCTTTATCGTCCAATCCGGAGAAACCGAAATATTGGCGGAAATCGCG
CAAGACAGGGCATTGCAGCTATTGTCGGAATGGATGGCATTTTTCAATATCGGGCAAAACCGCCCGCTGCCGTTTTTTGC
CAAAACCTCGCTTGCCGCCGCCGAAGCGTTTGCCCAAAAACAAGATTGGGAAGCTGCCCTGAAAAAAGCCCAAACCGCCT
ACCACGGCAACAAAGTCAGCAAAGGGCAGAAAGACTATACCGAAGTCGCCCTCGTGTTCGGCAACGCAAGCCAAAACCCG
CTCGAACAGCCCCTGTTTGAAAACCTCGTCCGCCTGCTTGCCGACACGCTTGCCGCAGCGGAAAAAAGGGAAGGAGCCGG
AGAAGCCTGA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure
  AlphaFold DB D0W6F6

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recC Neisseria gonorrhoeae strain FA1090

94.107

100

0.941


Multiple sequence alignment