Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiD   Type   Regulator
Locus tag   FGK94_RS07615 Genome accession   NZ_LR590471
Coordinates   1622027..1622953 (+) Length   308 a.a.
NCBI ID   WP_043030145.1    Uniprot ID   -
Organism   Streptococcus equi subsp. zooepidemicus strain NCTC11854     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 1617027..1627953
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FGK94_RS07605 (NCTC11854_01557) amiA3 1618488..1620464 (+) 1977 WP_043026548.1 peptide ABC transporter substrate-binding protein Regulator
  FGK94_RS07610 (NCTC11854_01558) amiC 1620528..1622027 (+) 1500 WP_014623463.1 ABC transporter permease Regulator
  FGK94_RS07615 (NCTC11854_01559) amiD 1622027..1622953 (+) 927 WP_043030145.1 oligopeptide ABC transporter permease OppC Regulator
  FGK94_RS07620 (NCTC11854_01560) amiE 1622962..1624032 (+) 1071 WP_012516279.1 ABC transporter ATP-binding protein Regulator
  FGK94_RS07625 (NCTC11854_01561) amiF 1624025..1624948 (+) 924 WP_012516278.1 ATP-binding cassette domain-containing protein Regulator

Sequence

Protein


Download         Length: 308 a.a.        Molecular weight: 34560.47 Da        Isoelectric Point: 7.1547

>NTDB_id=1126894 FGK94_RS07615 WP_043030145.1 1622027..1622953(+) (amiD) [Streptococcus equi subsp. zooepidemicus strain NCTC11854]
MAAIDKNKFTFVELDSYASEVIDAPAYSYWKSVFRQFFSRKSTILMLVILIAIILMSFIYPMFANYDFGDVSNINDFSKR
YIAPNAEYWFGTDQNGQSLFDGVWYGARNSILISVIATIINMIIGVVIGGIWGVSKAVDKVMIEVYNIISNLPQMLIIIV
LTYSIGAGFWNLIFAFCVTGWIGIAYSIRVQILRYRDLEYNLASQTLGTPTHKIVIKNLLPQLVSVIVSMVSLLLPSYIS
SEAFLSFFGLGLPITEPSLGRLISNYSNNLTTNAYLFWIPLTTLILVSLPLYIVGQNLADASDPRTHR

Nucleotide


Download         Length: 927 bp        

>NTDB_id=1126894 FGK94_RS07615 WP_043030145.1 1622027..1622953(+) (amiD) [Streptococcus equi subsp. zooepidemicus strain NCTC11854]
ATGGCAGCAATTGACAAAAATAAATTCACCTTTGTTGAATTGGATAGCTATGCATCAGAAGTCATTGATGCCCCTGCTTA
CTCTTATTGGAAATCTGTCTTTAGGCAATTCTTCTCACGTAAATCAACTATTTTGATGCTGGTTATTTTAATCGCTATTA
TTTTGATGAGCTTCATCTACCCTATGTTTGCCAACTATGACTTTGGTGACGTGAGCAATATTAATGATTTTTCAAAGCGT
TATATCGCACCTAATGCAGAGTATTGGTTTGGTACGGATCAAAATGGTCAATCGCTCTTTGATGGTGTTTGGTATGGTGC
TAGAAATTCAATCTTAATTTCAGTCATTGCTACCATCATCAATATGATTATCGGAGTTGTTATTGGCGGTATTTGGGGTG
TTTCCAAGGCAGTTGATAAGGTAATGATTGAGGTGTATAATATCATCTCTAACCTGCCGCAAATGCTCATTATCATTGTG
TTGACTTATTCGATCGGAGCAGGCTTTTGGAACTTGATTTTTGCTTTTTGTGTGACAGGCTGGATTGGGATTGCCTACTC
TATTCGTGTGCAAATTTTGCGTTATCGTGATTTAGAATACAATTTAGCAAGTCAAACCCTAGGAACACCGACCCATAAGA
TTGTCATTAAAAACCTTTTGCCTCAATTGGTTTCAGTGATCGTTTCAATGGTTTCCTTGCTATTGCCGTCCTATATTTCA
TCAGAGGCCTTCTTATCCTTCTTTGGGTTGGGATTACCAATCACAGAACCAAGCTTGGGTCGATTGATTTCAAATTATTC
AAACAATTTAACAACGAATGCCTATTTATTCTGGATTCCATTAACAACTCTTATTCTTGTTTCCCTACCTTTATACATTG
TAGGACAAAACTTAGCAGATGCTAGTGATCCAAGGACGCATAGATAG

Domains

Predicted by InterproScan.

Binding-protein-dependent transport system inner membrane component (BPD_transp_1)

(125-306)

N-terminal TM domain of oligopeptide transport permease C (OppC_N)

(28-75)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiD Streptococcus salivarius strain HSISS4

75.325

100

0.753
  amiD Streptococcus thermophilus LMG 18311

74.351

100

0.744
  amiD Streptococcus thermophilus LMD-9

74.351

100

0.744

Multiple sequence alignment