Detailed information    

insolico Bioinformatically predicted

Overview

Name   clpC   Type   Regulator
Locus tag   FGK94_RS05530 Genome accession   NZ_LR590471
Coordinates   1205578..1208019 (-) Length   813 a.a.
NCBI ID   WP_138083054.1    Uniprot ID   -
Organism   Streptococcus equi subsp. zooepidemicus strain NCTC11854     
Function   degradation of ComX (predicted from homology)   
Competence regulation

Genomic Context

Location: 1200578..1213019
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FGK94_RS05490 (NCTC11854_01125) groES 1200634..1200921 (-) 288 WP_012514806.1 co-chaperone GroES -
  FGK94_RS05495 (NCTC11854_01126) - 1201221..1201511 (-) 291 WP_043029279.1 hypothetical protein -
  FGK94_RS05500 (NCTC11854_01127) - 1201492..1201884 (-) 393 WP_043029278.1 hypothetical protein -
  FGK94_RS05505 (NCTC11854_01128) - 1201866..1203155 (-) 1290 WP_043029277.1 hypothetical protein -
  FGK94_RS05510 (NCTC11854_01129) - 1203157..1203588 (-) 432 WP_043029276.1 hypothetical protein -
  FGK94_RS05515 (NCTC11854_01131) - 1203723..1204154 (-) 432 WP_043029275.1 hypothetical protein -
  FGK94_RS05520 (NCTC11854_01133) - 1204375..1204806 (-) 432 WP_043029274.1 hypothetical protein -
  FGK94_RS05525 - 1205086..1205232 (+) 147 WP_080312399.1 putative holin-like toxin -
  FGK94_RS05530 (NCTC11854_01136) clpC 1205578..1208019 (-) 2442 WP_138083054.1 AAA family ATPase Regulator
  FGK94_RS05535 (NCTC11854_01137) - 1208019..1208480 (-) 462 WP_012514800.1 CtsR family transcriptional regulator -
  FGK94_RS05540 (NCTC11854_01138) - 1208652..1208855 (-) 204 WP_012514799.1 cold-shock protein -
  FGK94_RS05550 (NCTC11854_01140) ahpC 1209487..1210047 (+) 561 WP_012514798.1 alkyl hydroperoxide reductase subunit C -
  FGK94_RS05555 (NCTC11854_01141) ahpF 1210068..1211600 (+) 1533 WP_043029272.1 alkyl hydroperoxide reductase subunit F -
  FGK94_RS05560 (NCTC11854_01142) rpsB 1212061..1212831 (+) 771 WP_043029271.1 30S ribosomal protein S2 -

Sequence

Protein


Download         Length: 813 a.a.        Molecular weight: 90312.11 Da        Isoelectric Point: 6.5231

>NTDB_id=1126874 FGK94_RS05530 WP_138083054.1 1205578..1208019(-) (clpC) [Streptococcus equi subsp. zooepidemicus strain NCTC11854]
MMTYSLKMQDIFNQAQFQAGRFDSPYLETWHILLAMVAVDHSLAAMVLSEFERKIRAEEYEAAAILAMGKSPKEVTSVQF
KPQSKALSEILAFAHAICQVTNEHEVGSEHVLFAILLNPDIMASRLLELAGYRLKDSGKGEPRFADLRKAIELNAGYSKE
TIKAIHELRKPKKSKSVGTFSEMMKPQSTAGELSDFTRDLTEMARQGLLEPVIGREKEVSRMVQVLCRKTKNNPVLVGDA
GVGKTALAYGLAQRIANGAIPYELQDMRVLELDMMSVVAGTRFRGDFEERMNQLIDDIEADGKIILFVDELHTIMGSGSG
IDSTLDAANILKPALSRGTLHMVGATTQEEYQKHIEKDAALSRRFAKILIEEPSVEDAYQILLGLKPSYEQYHNVTISDT
AVHTAVKLARRYLTSKQLPDSAIDLLDEASAMVQSMVKKTQPDFITPLDQALLDGDMSKVSALLAKEDKQPKLKPTAVTE
DDMLHTLSKLSGVPLEKLTQADSKKYLNLEKELHKRVVGQEMAVSAIARAIRRNQSGIRTGRRPIGSFMFLGPTGVGKTE
LAKALAELLFDDESALIRFDMSEYMEKFAASRLNGAPPGYVGYDEGGELTEKVRNKPYAVLLFDEVEKAHPDIFNILLQV
LDDGMLTDSRGRKVDFSNTIIIMTSNLGATALRDDKTVGFGAKAIGHDHQTMEKRILEELKKAYRPEFINRIDEKVVFHS
LTQENMRDVVKIMVKPLIAALAEKHISLKFQPSALKYLSEAGYDVEMGARPLRRTLQTEVEDRLAELMLSGELSSGQSLK
IGVSRGKLAFDIA

Nucleotide


Download         Length: 2442 bp        

>NTDB_id=1126874 FGK94_RS05530 WP_138083054.1 1205578..1208019(-) (clpC) [Streptococcus equi subsp. zooepidemicus strain NCTC11854]
GTGATGACTTATTCATTAAAGATGCAAGACATTTTTAATCAGGCTCAATTTCAGGCAGGGCGCTTTGATAGTCCCTACCT
TGAGACCTGGCACATTTTATTAGCTATGGTAGCTGTTGATCATTCTTTAGCAGCCATGGTTTTAAGTGAATTTGAACGAA
AGATCAGAGCTGAAGAGTATGAGGCAGCTGCCATTTTAGCTATGGGAAAAAGTCCCAAGGAGGTGACTTCTGTCCAATTC
AAGCCGCAATCCAAGGCCTTATCAGAAATACTAGCATTTGCGCATGCTATCTGTCAGGTTACCAATGAGCATGAGGTTGG
CTCAGAGCATGTACTCTTTGCTATTTTGCTCAATCCGGATATTATGGCCAGTCGTCTGTTAGAGTTGGCAGGCTACAGGC
TCAAGGATTCTGGCAAGGGAGAGCCTAGGTTTGCGGATTTACGTAAGGCTATTGAGCTAAATGCCGGCTATAGCAAGGAA
ACTATTAAGGCGATTCATGAGTTGCGTAAGCCTAAAAAGAGTAAATCAGTAGGCACCTTTTCTGAAATGATGAAGCCACA
GAGTACAGCTGGTGAGCTATCAGACTTTACAAGAGACCTGACAGAGATGGCAAGACAGGGCTTATTAGAGCCAGTCATCG
GACGAGAAAAAGAGGTGTCACGTATGGTTCAGGTGCTTTGTCGTAAGACGAAAAATAATCCTGTTCTTGTTGGTGATGCG
GGTGTCGGAAAAACTGCTCTAGCTTATGGCTTAGCGCAGCGAATTGCTAATGGAGCCATTCCTTATGAATTACAAGACAT
GCGTGTCTTGGAGCTTGACATGATGAGTGTGGTTGCAGGTACCCGTTTTCGTGGGGATTTTGAAGAGCGCATGAATCAAC
TCATTGACGATATTGAAGCAGATGGTAAGATCATTTTGTTTGTCGATGAGCTACATACCATTATGGGATCAGGAAGTGGT
ATTGACAGCACTCTTGATGCAGCTAATATTCTAAAGCCAGCCCTTTCTCGCGGTACCCTGCATATGGTTGGTGCTACAAC
TCAAGAGGAATATCAAAAGCATATTGAAAAGGACGCAGCCCTTTCTCGTCGCTTTGCCAAAATATTGATTGAGGAGCCTA
GTGTTGAGGACGCTTATCAGATTTTGCTTGGCTTGAAGCCTTCCTATGAACAGTACCATAATGTAACAATCTCTGATACA
GCTGTCCATACTGCTGTGAAGCTGGCTCGGCGCTATTTGACAAGTAAGCAGCTTCCAGACTCAGCGATTGATCTGCTTGA
TGAAGCCAGTGCGATGGTGCAAAGTATGGTTAAAAAGACGCAGCCTGACTTTATAACACCGCTTGATCAAGCCCTGCTTG
ATGGTGATATGAGCAAGGTGTCAGCCCTTTTAGCCAAAGAGGATAAGCAACCAAAGCTAAAACCAACAGCAGTCACTGAA
GATGATATGTTACACACCTTAAGCAAGCTATCAGGTGTTCCCCTAGAAAAACTAACTCAGGCGGATAGTAAAAAATACCT
AAATTTGGAAAAGGAATTGCATAAGCGTGTTGTTGGTCAGGAAATGGCTGTTTCTGCTATTGCACGAGCCATTCGTCGTA
ACCAGTCAGGCATTCGCACAGGCAGGCGTCCGATTGGCTCCTTTATGTTTCTTGGTCCAACTGGTGTCGGAAAAACAGAG
CTAGCAAAGGCCTTGGCCGAATTACTCTTTGATGATGAGTCAGCCCTTATTCGTTTTGATATGTCTGAGTACATGGAAAA
ATTTGCAGCCTCCCGTCTTAATGGGGCTCCTCCTGGCTATGTTGGCTATGATGAGGGAGGAGAGCTAACCGAAAAGGTTA
GAAATAAGCCTTATGCCGTTCTTCTTTTTGATGAGGTTGAAAAGGCTCACCCAGACATCTTTAATATCCTGCTGCAGGTC
CTTGATGATGGTATGTTAACAGATAGTCGTGGACGTAAGGTTGATTTTTCAAACACGATTATTATCATGACGAGCAACCT
AGGAGCAACTGCTCTAAGAGATGATAAGACGGTTGGATTTGGCGCTAAAGCGATCGGTCATGACCATCAAACAATGGAAA
AGCGTATTTTGGAGGAATTGAAAAAGGCTTATCGGCCTGAATTTATCAACAGAATTGATGAGAAGGTGGTCTTCCATAGC
CTAACACAGGAAAACATGCGTGATGTGGTGAAAATTATGGTTAAGCCGCTGATTGCAGCCTTGGCAGAAAAGCATATTAG
CCTTAAGTTCCAGCCATCAGCTCTCAAGTACTTGTCTGAAGCTGGTTACGATGTTGAAATGGGCGCTCGCCCACTTCGTC
GCACCTTGCAAACAGAGGTTGAGGACAGGTTAGCAGAATTAATGCTGTCAGGAGAGTTATCAAGCGGTCAAAGCCTCAAG
ATTGGTGTATCACGTGGGAAGCTAGCTTTTGATATCGCTTAA

Domains

Predicted by InterproScan.

Clp amino terminal domain, pathogenicity island component (Clp_N)

(95-131)

Clp amino terminal domain, pathogenicity island component (Clp_N)

(16-51)

ATPase family associated with various cellular activities (AAA) (AAA)

(235-367)

AAA domain (Cdc48 subfamily) (AAA_2)

(543-714)

AAA lid domain (AAA_lid_9)

(374-457)

C-terminal, D2-small domain, of ClpB protein (ClpB_D2-small)

(721-800)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  clpC Streptococcus mutans UA159

74.662

100

0.747
  clpC Streptococcus thermophilus LMD-9

71.814

100

0.721
  clpC Streptococcus thermophilus LMG 18311

71.569

100

0.718
  clpC Streptococcus pneumoniae Rx1

65.848

100

0.659
  clpC Streptococcus pneumoniae D39

65.848

100

0.659
  clpC Streptococcus pneumoniae TIGR4

65.725

100

0.658
  clpC Lactococcus lactis subsp. lactis strain DGCC12653

48.626

100

0.501
  clpC Bacillus subtilis subsp. subtilis str. 168

43.952

100

0.451

Multiple sequence alignment