Detailed information    

insolico Bioinformatically predicted

Overview

Name   pepF   Type   Regulator
Locus tag   FGK94_RS03130 Genome accession   NZ_LR590471
Coordinates   678408..680210 (-) Length   600 a.a.
NCBI ID   WP_043029509.1    Uniprot ID   -
Organism   Streptococcus equi subsp. zooepidemicus strain NCTC11854     
Function   degradation of XIP; competence shut-off (predicted from homology)   
Competence regulation

Genomic Context

Location: 673408..685210
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FGK94_RS03105 (NCTC11854_00644) prsA 674487..675488 (-) 1002 WP_043052029.1 peptidylprolyl isomerase PrsA -
  FGK94_RS03110 (NCTC11854_00645) - 675551..676258 (-) 708 WP_037578895.1 O-methyltransferase -
  FGK94_RS03115 (NCTC11854_00646) - 676341..676979 (-) 639 WP_043029511.1 HAD family hydrolase -
  FGK94_RS03120 (NCTC11854_00647) - 677026..677661 (-) 636 WP_043029510.1 HAD-IA family hydrolase -
  FGK94_RS03125 (NCTC11854_00648) - 677651..678208 (-) 558 WP_012678253.1 GNAT family N-acetyltransferase -
  FGK94_RS03130 (NCTC11854_00649) pepF 678408..680210 (-) 1803 WP_043029509.1 oligoendopeptidase F Regulator
  FGK94_RS03135 (NCTC11854_00650) - 680200..681177 (-) 978 WP_043029508.1 competence protein CoiA -
  FGK94_RS03140 (NCTC11854_00651) - 681269..681985 (-) 717 WP_043029507.1 pseudouridine synthase -
  FGK94_RS03145 (NCTC11854_00652) nagB 682157..682861 (-) 705 WP_012515299.1 glucosamine-6-phosphate deaminase -
  FGK94_RS03150 (NCTC11854_00653) queA 683130..684158 (+) 1029 WP_043029506.1 tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA -

Sequence

Protein


Download         Length: 600 a.a.        Molecular weight: 69014.79 Da        Isoelectric Point: 4.5609

>NTDB_id=1126862 FGK94_RS03130 WP_043029509.1 678408..680210(-) (pepF) [Streptococcus equi subsp. zooepidemicus strain NCTC11854]
MTDNRSHLEEKYTWDLSTIFATDAAWETEADSLLAAIEAARQQAGHLLDSSSSLLDITELQLELARRVEKLYVYASMKND
QDTTVAKYQEYQAKASGIYAKFSEAFSFYEPEFMALSQETYQAFLAEKPELAVYDHFFDKLFKAREHVLSQAEEELLAGA
QEIFNGAEETFSILDNADIAFPIVTNDKGEEVELTHGNFISLMESKDRTVRQAAYEAMYSTYEQFQHTYAKTLQTNVKVQ
NYKARVHKYASARQAAMSANFIPEAVYDTLLETVNKHLPLLHRYLKLRQEVLGLDDLKMYDVYTPLSETDLAIGYDEALE
KAEKILAVFGQDYSERVHRAFTERWIDVHVNKGKRSGAYSGGSYDTNAFMLLNWQDTLDNLYTLVHETGHSLHSTFTRET
QPYVYGDYSIFLAEIASTTNENIMTEALLNEVEDDKERFAILNHYLDGFRGTVFRQTQFAEFEHAIHQADQNGEVLTSEY
LNKLYADLNEKYYGLKKEDNHFIQYEWARIPHFYYNYYVYQYATGFAAASYLADKIVHGTQEDIDHYLTYLKSGNSDYPL
EVIAKAGVDMGKGDYLEAAFKVFEERLTELEDLVARGAHL

Nucleotide


Download         Length: 1803 bp        

>NTDB_id=1126862 FGK94_RS03130 WP_043029509.1 678408..680210(-) (pepF) [Streptococcus equi subsp. zooepidemicus strain NCTC11854]
ATGACAGATAATCGTAGTCATCTAGAGGAAAAGTACACTTGGGATTTAAGCACTATTTTTGCAACAGACGCAGCTTGGGA
GACAGAGGCAGATAGTCTGCTGGCAGCAATTGAGGCTGCAAGGCAGCAGGCTGGGCATTTGTTGGATTCAAGCAGCAGTC
TCTTAGATATCACAGAGCTGCAGTTGGAGCTGGCTCGTCGTGTTGAAAAGCTTTATGTTTATGCCAGCATGAAAAACGAT
CAGGATACAACAGTTGCCAAGTATCAGGAATATCAGGCAAAGGCTTCTGGTATTTATGCTAAATTTAGCGAAGCCTTTTC
TTTTTATGAGCCAGAGTTTATGGCCTTGAGTCAAGAGACCTATCAGGCCTTCTTAGCGGAGAAGCCAGAATTAGCAGTCT
ATGACCATTTCTTTGACAAGCTGTTTAAGGCGCGTGAGCATGTCCTTAGTCAGGCTGAGGAGGAGCTATTAGCAGGGGCA
CAAGAAATCTTTAATGGTGCTGAGGAGACCTTTAGTATCCTAGATAATGCCGACATTGCTTTTCCTATTGTGACAAATGA
TAAGGGAGAAGAGGTTGAGCTAACACATGGTAATTTCATTAGCCTAATGGAATCTAAAGACCGTACAGTGCGTCAGGCTG
CCTATGAGGCGATGTATAGCACCTATGAGCAATTCCAGCATACCTATGCTAAAACCCTGCAAACCAATGTCAAGGTGCAA
AATTATAAGGCACGTGTCCATAAGTATGCTTCAGCCCGTCAGGCAGCTATGTCAGCCAACTTTATTCCAGAGGCTGTTTA
CGATACCCTACTAGAAACCGTTAATAAGCATTTACCGCTGCTTCATCGTTACCTGAAGCTGCGTCAAGAGGTGCTTGGCT
TAGATGATCTAAAGATGTACGATGTTTATACTCCTTTATCTGAGACAGACCTTGCTATTGGTTATGATGAGGCCTTGGAA
AAAGCAGAGAAGATTTTGGCTGTTTTTGGTCAGGATTATTCAGAGCGTGTGCATCGTGCCTTTACAGAGCGTTGGATTGA
TGTGCATGTCAATAAGGGCAAACGCTCAGGAGCTTACTCTGGTGGTTCCTATGATACCAATGCCTTTATGCTCTTAAATT
GGCAAGACACCCTTGATAACCTCTATACTTTGGTGCATGAGACAGGCCATAGCCTGCATTCAACCTTTACGCGTGAAACA
CAGCCTTACGTGTATGGAGATTACAGCATTTTCCTAGCTGAGATTGCCTCAACGACGAATGAAAACATCATGACTGAGGC
CTTGCTAAATGAGGTAGAGGACGACAAGGAGCGCTTTGCTATTTTGAACCATTACCTAGATGGTTTTCGTGGAACGGTTT
TCCGTCAAACACAGTTTGCTGAGTTTGAGCATGCTATTCATCAGGCGGATCAAAATGGCGAGGTGTTAACAAGTGAATAC
CTCAATAAGCTATATGCTGATTTAAACGAAAAATATTATGGCTTAAAAAAAGAGGACAACCATTTTATCCAGTATGAGTG
GGCTCGCATTCCGCATTTCTATTACAATTATTATGTCTACCAGTATGCAACAGGCTTTGCAGCAGCGAGCTATTTGGCTG
ATAAGATTGTTCATGGCACACAAGAGGATATTGATCATTACTTGACCTACCTCAAGTCTGGAAATTCAGATTACCCACTT
GAAGTGATTGCTAAGGCTGGGGTTGATATGGGTAAGGGTGATTACCTCGAAGCAGCCTTTAAGGTCTTTGAAGAGCGTTT
GACAGAGCTAGAGGACTTAGTGGCAAGAGGGGCTCATCTCTAA

Domains

Predicted by InterproScan.

Peptidase family M3 (Peptidase_M3)

(202-581)

Oligopeptidase F (Peptidase_M3_N)

(112-181)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pepF Streptococcus salivarius strain HSISS4

73

100

0.73

Multiple sequence alignment