Detailed information    

insolico Bioinformatically predicted

Overview

Name   HI0659   Type   Machinery gene
Locus tag   FGK94_RS02405 Genome accession   NZ_LR590471
Coordinates   529601..529897 (-) Length   98 a.a.
NCBI ID   WP_043040417.1    Uniprot ID   -
Organism   Streptococcus equi subsp. zooepidemicus strain NCTC11854     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
Prophage 526492..538538 529601..529897 within 0


Gene organization within MGE regions


Location: 526492..538538
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FGK94_RS02380 (NCTC11854_00497) - 526492..526752 (-) 261 WP_021320634.1 type II toxin-antitoxin system RelE family toxin -
  FGK94_RS02385 (NCTC11854_00498) relB 526754..526975 (-) 222 WP_012678125.1 type II toxin-antitoxin system RelB family antitoxin -
  FGK94_RS02390 (NCTC11854_00499) - 527185..527421 (+) 237 Protein_474 ISL3 family transposase -
  FGK94_RS10485 - 527668..527757 (-) 90 WP_111677961.1 type I toxin-antitoxin system Fst family toxin -
  FGK94_RS10280 (NCTC11854_00500) - 528200..528367 (-) 168 WP_165626014.1 hypothetical protein -
  FGK94_RS02400 (NCTC11854_00501) - 528374..529579 (-) 1206 WP_138082913.1 hypothetical protein -
  FGK94_RS02405 (NCTC11854_00502) HI0659 529601..529897 (-) 297 WP_043040417.1 helix-turn-helix domain-containing protein Machinery gene
  FGK94_RS02410 (NCTC11854_00503) - 529887..530252 (-) 366 WP_043040416.1 type II toxin-antitoxin system RelE/ParE family toxin -
  FGK94_RS02415 (NCTC11854_00504) - 530452..530862 (-) 411 WP_138082915.1 hypothetical protein -
  FGK94_RS02420 (NCTC11854_00505) - 531095..531382 (-) 288 WP_138082917.1 hypothetical protein -
  FGK94_RS02425 (NCTC11854_00506) - 531379..531957 (-) 579 WP_138082919.1 hypothetical protein -
  FGK94_RS02430 (NCTC11854_00507) - 532053..532235 (-) 183 WP_138082921.1 hypothetical protein -
  FGK94_RS02435 (NCTC11854_00508) - 532687..532881 (-) 195 WP_138082923.1 hypothetical protein -
  FGK94_RS02440 (NCTC11854_00509) - 532914..533762 (-) 849 WP_138082925.1 ATP-binding protein -
  FGK94_RS02445 (NCTC11854_00510) - 533778..534626 (-) 849 WP_138082927.1 DnaD domain protein -
  FGK94_RS02450 (NCTC11854_00511) - 534626..534811 (-) 186 WP_138082929.1 hypothetical protein -
  FGK94_RS10285 - 534818..534976 (-) 159 WP_162841287.1 hypothetical protein -
  FGK94_RS02455 (NCTC11854_00512) - 534987..535253 (-) 267 WP_138082931.1 hypothetical protein -
  FGK94_RS02460 (NCTC11854_00513) - 535269..535460 (-) 192 WP_138082933.1 hypothetical protein -
  FGK94_RS02465 (NCTC11854_00514) - 535463..535714 (-) 252 WP_138082935.1 hypothetical protein -
  FGK94_RS02470 (NCTC11854_00515) - 535735..536151 (-) 417 WP_138082937.1 hypothetical protein -
  FGK94_RS02475 (NCTC11854_00516) - 536335..536523 (-) 189 WP_138082939.1 DNA-binding protein -
  FGK94_RS10290 (NCTC11854_00517) - 536710..537294 (+) 585 WP_207621811.1 helix-turn-helix domain-containing protein -
  FGK94_RS02485 (NCTC11854_00518) - 537372..538538 (+) 1167 WP_138082941.1 tyrosine-type recombinase/integrase -

Sequence

Protein


Download         Length: 98 a.a.        Molecular weight: 10740.40 Da        Isoelectric Point: 4.8898

>NTDB_id=1126860 FGK94_RS02405 WP_043040417.1 529601..529897(-) (HI0659) [Streptococcus equi subsp. zooepidemicus strain NCTC11854]
MKNNAIGSNWKDVRAELFSKEEILESDMRVAIMSELIEARNEKGISQKKLEELSGVSQPVIARMETGKTSPQLDTVLKVL
ASLGKTLAVVPIEGEQVS

Nucleotide


Download         Length: 297 bp        

>NTDB_id=1126860 FGK94_RS02405 WP_043040417.1 529601..529897(-) (HI0659) [Streptococcus equi subsp. zooepidemicus strain NCTC11854]
ATGAAAAATAATGCTATTGGTAGTAACTGGAAAGATGTAAGAGCTGAATTATTCAGCAAAGAAGAAATTTTGGAAAGTGA
TATGCGCGTGGCTATCATGAGCGAGCTTATCGAGGCTAGAAATGAAAAGGGCATTAGTCAGAAGAAGCTAGAGGAGCTTA
GCGGTGTTAGTCAGCCAGTTATCGCTAGAATGGAAACAGGAAAGACAAGCCCACAACTTGATACAGTATTAAAAGTGTTG
GCAAGTCTTGGTAAGACGTTGGCTGTTGTACCCATAGAGGGCGAACAGGTAAGCTAG

Domains

Predicted by InterproScan.

Helix-turn-helix (HTH_3)

(37-88)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  HI0659 Haemophilus influenzae Rd KW20

57.143

92.857

0.531

Multiple sequence alignment