Detailed information    

insolico Bioinformatically predicted

Overview

Name   rec2   Type   Machinery gene
Locus tag   FGK83_RS04460 Genome accession   NZ_LR590465
Coordinates   887386..889752 (+) Length   788 a.a.
NCBI ID   WP_138171781.1    Uniprot ID   -
Organism   Haemophilus influenzae strain NCTC8468     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 882386..894752
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FGK83_RS04435 (NCTC8468_00880) - 882734..884032 (-) 1299 WP_138171779.1 N-acetylmuramoyl-L-alanine amidase -
  FGK83_RS04440 (NCTC8468_00881) tsaE 884040..884516 (-) 477 WP_005691003.1 tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex ATPase subunit type 1 TsaE -
  FGK83_RS04445 (NCTC8468_00882) folK 884592..885074 (-) 483 WP_138171780.1 2-amino-4-hydroxy-6- hydroxymethyldihydropteridine diphosphokinase -
  FGK83_RS04450 (NCTC8468_00883) pcnB 885083..886441 (-) 1359 WP_138172192.1 polynucleotide adenylyltransferase PcnB -
  FGK83_RS04455 (NCTC8468_00884) dksA 886689..887126 (-) 438 WP_005652560.1 RNA polymerase-binding protein DksA -
  FGK83_RS04460 (NCTC8468_00885) rec2 887386..889752 (+) 2367 WP_138171781.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  FGK83_RS04465 (NCTC8468_00886) msbA 889793..891556 (+) 1764 WP_138171782.1 lipid A ABC transporter ATP-binding protein/permease MsbA -
  FGK83_RS04470 (NCTC8468_00887) lpxK 891629..892627 (+) 999 WP_138171783.1 tetraacyldisaccharide 4'-kinase -
  FGK83_RS04475 (NCTC8468_00888) kdsB 892696..893460 (+) 765 WP_138171784.1 3-deoxy-manno-octulosonate cytidylyltransferase -

Sequence

Protein


Download         Length: 788 a.a.        Molecular weight: 89675.00 Da        Isoelectric Point: 10.0239

>NTDB_id=1126756 FGK83_RS04460 WP_138171781.1 887386..889752(+) (rec2) [Haemophilus influenzae strain NCTC8468]
MKLNLITLAVLLIVADLTLLFLPQSLLLPWQVALVIALVLIFLFIFWRKNFLVSLAFFVASLGYFHHSALSLLQQAQRIT
AQKQMVTFEIQEILHQQDYQTLIATATLADNLREQRIFLNWKAKEVPQLSEIWQAEISLRPLSARLNFGGFDRQQWYFSK
GITAVGTVKSAVKIADVSSLRAEKLQQVRKQTEGLSLQGLLIALAFGERAWLDKNTWSIYQQTNTAHLIAISGLHIGLAM
GIGFYLARVVQVFFPTRFIHPYFPLVFGVLFALIYAYLAGFSVPTFRAISALVFVFFVQIMRRYYSPFQLFTLVVGFLLF
CDPLMPLSVSFWFSFGAVGCLILWYRYVPFSLFQWKNRPFSPKVRWILSLFHLQFGLLLFFTPLQLFLFNGLSLSGFLAN
LIAVPIYSFFLVPLILFAVFTNGAVFSWQLANKLAEVITGLISVFQGNWLTVSFNLALVLTALCSGIFMLIIWRIYREPE
VSSSNWQIKRPRFFTLNLNKPLLKNDQNNVLRCSFGIILLCFTILLFKQLSKPTWQVDTLDVGQGLATLIVKNGKGILYD
TGSSWRGGSMAELEILPYLQRKGIVLEKLILSHDDNDHAGGASTILKAYPNVELIPPSRKNYGENYRTFCTAGRDWHWQG
LHFQILSPHNIVTRADNPHSCVILVDDGKHSVLLTGDAEAKNEQIFARTLGKIDVLQVGHHGSKTSTSEYLLSQVRPDVA
IISSGRWNPWKFPHYSVTERLQRYKSAVENTAISGQVRVNFFKDRLEIQQARTEFSPWYARVIGLSSE

Nucleotide


Download         Length: 2367 bp        

>NTDB_id=1126756 FGK83_RS04460 WP_138171781.1 887386..889752(+) (rec2) [Haemophilus influenzae strain NCTC8468]
ATGAAATTAAACTTAATAACTTTAGCTGTCTTGTTAATTGTTGCGGATTTAACGTTGTTATTTCTACCGCAGTCATTGCT
ATTGCCTTGGCAAGTTGCTCTCGTTATTGCGCTTGTTTTGATTTTTCTTTTTATTTTTTGGCGTAAAAATTTCTTAGTTA
GCCTTGCTTTTTTTGTTGCTTCTCTTGGCTATTTTCATCATTCGGCTTTGAGTTTATTACAACAAGCTCAACGTATTACC
GCTCAAAAGCAAATGGTGACTTTTGAGATTCAAGAAATTTTGCATCAACAGGATTATCAAACACTTATCGCCACAGCAAC
ATTGGCGGATAACTTACGAGAACAACGAATTTTCTTAAATTGGAAGGCGAAAGAGGTGCCTCAACTATCGGAAATTTGGC
AAGCTGAAATTTCCTTACGTCCCCTTTCTGCGCGATTAAATTTTGGCGGATTTGATCGGCAACAATGGTATTTTTCAAAG
GGAATTACTGCTGTTGGAACGGTAAAAAGTGCGGTGAAAATTGCTGATGTTTCATCATTGCGTGCAGAAAAATTGCAACA
AGTGAGAAAGCAAACGGAAGGATTATCTCTACAAGGTTTATTGATTGCGTTAGCTTTTGGCGAACGGGCTTGGTTAGATA
AAAACACTTGGTCAATTTACCAACAAACGAATACCGCACATCTTATTGCTATTTCTGGCTTACATATTGGGTTGGCTATG
GGAATTGGATTTTACTTGGCTCGTGTTGTGCAAGTATTTTTCCCAACCCGTTTTATTCATCCTTATTTTCCTTTAGTTTT
TGGTGTTTTATTTGCTTTAATTTATGCCTATTTGGCTGGTTTTAGCGTGCCAACTTTTCGTGCCATTTCAGCACTTGTTT
TCGTTTTCTTCGTTCAAATAATGAGGAGATATTATTCGCCTTTTCAGCTTTTTACGTTGGTTGTCGGATTCTTGCTTTTC
TGCGATCCACTAATGCCCCTTTCGGTCAGTTTTTGGTTTTCTTTTGGTGCTGTTGGTTGTTTGATCCTCTGGTATCGTTA
TGTGCCTTTTTCTCTTTTTCAATGGAAAAATCGCCCCTTTTCACCAAAAGTGCGGTGGATTTTGAGTTTATTTCATTTGC
AATTTGGGTTATTGCTCTTTTTTACGCCTTTGCAACTTTTTCTATTTAATGGCTTATCGCTGAGTGGATTTTTAGCCAAT
CTTATTGCTGTTCCAATTTATAGTTTTTTCCTTGTGCCATTAATTTTATTTGCTGTTTTTACCAACGGCGCGGTTTTTTC
TTGGCAACTTGCAAACAAGCTGGCTGAAGTGATTACTGGGTTAATTTCTGTTTTTCAAGGAAATTGGCTCACGGTTTCAT
TTAATTTAGCATTGGTTTTAACCGCACTTTGTAGCGGAATCTTTATGTTAATTATTTGGCGTATTTATCGAGAACCTGAG
GTTTCATCATCAAACTGGCAAATAAAACGACCAAGATTTTTTACATTAAATCTCAATAAACCCTTGCTAAAAAATGATCA
GAACAACGTTTTGCGATGTTCTTTCGGCATTATCTTACTGTGTTTTACTATTTTGTTGTTTAAACAATTGAGCAAACCAA
CTTGGCAGGTAGATACTTTAGATGTGGGGCAGGGGCTGGCAACGCTGATTGTGAAAAATGGCAAAGGGATTCTTTATGAT
ACGGGTTCTTCTTGGCGAGGTGGAAGTATGGCTGAGTTGGAAATTTTGCCTTATTTGCAAAGAAAAGGGATTGTTTTGGA
AAAATTGATTTTAAGCCACGACGATAACGATCATGCAGGTGGTGCTTCGACAATTTTAAAGGCGTATCCCAATGTGGAAT
TGATTCCCCCTTCACGAAAAAACTATGGGGAAAATTACCGCACTTTTTGTACAGCTGGACGTGATTGGCATTGGCAAGGG
CTACATTTTCAAATACTTTCTCCTCACAACATTGTGACACGAGCTGATAATCCCCATTCTTGTGTGATTTTAGTCGATGA
TGGAAAGCATAGCGTTTTACTGACTGGCGATGCTGAAGCAAAAAATGAACAAATTTTTGCCCGCACTTTAGGAAAAATTG
ATGTGTTACAAGTGGGGCATCACGGAAGTAAAACATCGACAAGTGAATACTTACTTTCTCAGGTTAGACCAGATGTGGCG
ATTATTTCTAGTGGACGTTGGAATCCGTGGAAATTCCCCCATTATTCGGTTACGGAAAGGCTTCAACGCTATAAAAGTGC
GGTAGAAAATACCGCTATTTCGGGGCAAGTGCGGGTAAATTTTTTTAAAGACCGATTAGAAATCCAGCAAGCTCGCACAG
AATTTTCCCCTTGGTATGCACGTGTAATTGGATTATCGAGCGAATAA

Domains

Predicted by InterproScan.

Competence protein (Competence)

(204-473)

Metallo-beta-lactamase superfamily (Lactamase_B)

(541-725)

Domain of unknown function (DUF4131) (DUF4131)

(29-171)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rec2 Haemophilus influenzae Rd KW20

93.401

100

0.934

Multiple sequence alignment