Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   FGK83_RS01925 Genome accession   NZ_LR590465
Coordinates   382086..382739 (+) Length   217 a.a.
NCBI ID   WP_080358974.1    Uniprot ID   A0AAX3IPP3
Organism   Haemophilus influenzae strain NCTC8468     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 377086..387739
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FGK83_RS01900 (NCTC8468_00372) - 377494..378498 (-) 1005 WP_105887572.1 ornithine carbamoyltransferase -
  FGK83_RS01905 (NCTC8468_00373) - 378913..379731 (+) 819 WP_138171521.1 Cof-type HAD-IIB family hydrolase -
  FGK83_RS01910 (NCTC8468_00374) crcB 379731..380117 (+) 387 WP_111691157.1 fluoride efflux transporter CrcB -
  FGK83_RS01915 (NCTC8468_00375) recX 380114..380572 (-) 459 WP_118806804.1 recombination regulator RecX -
  FGK83_RS01920 (NCTC8468_00376) recA 380650..381714 (-) 1065 WP_050848032.1 recombinase RecA Machinery gene
  FGK83_RS01925 sxy/tfoX 382086..382739 (+) 654 WP_080358974.1 DNA transformation protein TfoX Regulator

Sequence

Protein


Download         Length: 217 a.a.        Molecular weight: 25161.67 Da        Isoelectric Point: 9.7937

>NTDB_id=1126737 FGK83_RS01925 WP_080358974.1 382086..382739(+) (sxy/tfoX) [Haemophilus influenzae strain NCTC8468]
MNIKDGHIDKVCSLLDLLVGNVTFKNLFTGYGLFHKEETMFAIWQNKKLYLRGEDELATQLIKLGCEPFTTNELNKRFVL
SQYYALTEQVLRNNMLCRKLIILSIKQIIEQKLECTLRKLNRLKDLPNLTIKHERALIKVGITDVMMLREIGAENALVEL
KKNGSGATLDFYWKLVCALQNKNSQMLSQAEKERLLKKLNEVLRKNGLKGYRKLDDE

Nucleotide


Download         Length: 654 bp        

>NTDB_id=1126737 FGK83_RS01925 WP_080358974.1 382086..382739(+) (sxy/tfoX) [Haemophilus influenzae strain NCTC8468]
ATGAATATAAAGGATGGACATATAGATAAAGTTTGCTCTTTGCTAGACCTGTTAGTAGGAAATGTTACCTTTAAAAATCT
TTTTACTGGTTACGGTTTGTTTCACAAGGAAGAGACAATGTTTGCCATCTGGCAAAATAAAAAGCTTTATTTACGAGGTG
AAGATGAGCTTGCAACTCAATTAATAAAATTAGGTTGTGAACCTTTTACAACGAATGAATTGAATAAACGGTTTGTGCTT
TCACAATATTATGCACTTACTGAACAGGTTTTACGTAATAATATGTTATGTAGAAAATTGATTATTCTTTCTATTAAGCA
GATTATTGAGCAGAAGCTAGAATGTACGTTAAGAAAGTTAAATCGATTAAAGGATTTACCCAATTTAACGATTAAACACG
AAAGAGCTTTAATAAAAGTTGGTATTACAGATGTTATGATGCTAAGAGAAATTGGTGCAGAAAATGCATTGGTGGAATTA
AAGAAAAATGGCAGTGGTGCTACGCTTGATTTTTATTGGAAGTTAGTATGTGCTTTGCAAAATAAAAATAGTCAGATGTT
AAGTCAAGCTGAAAAAGAGCGTTTATTGAAGAAATTAAACGAAGTTTTGAGAAAAAATGGCTTGAAAGGCTATAGAAAAT
TAGATGATGAATAA

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(19-107)

TfoX C-terminal domain (TfoX_C)

(121-198)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Haemophilus influenzae Rd KW20

91.705

100

0.917

Multiple sequence alignment