Detailed information    

insolico Bioinformatically predicted

Overview

Name   comN   Type   Machinery gene
Locus tag   FGK83_RS00270 Genome accession   NZ_LR590465
Coordinates   56525..57037 (-) Length   170 a.a.
NCBI ID   WP_138171389.1    Uniprot ID   -
Organism   Haemophilus influenzae strain NCTC8468     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 51525..62037
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FGK83_RS00255 (NCTC8468_00049) comQ 54846..55133 (-) 288 WP_054249354.1 DUF5374 domain-containing protein Machinery gene
  FGK83_RS00260 (NCTC8468_00050) comP 55126..55809 (-) 684 WP_138171387.1 DUF2572 family protein Machinery gene
  FGK83_RS00265 (NCTC8468_00051) comO 55806..56525 (-) 720 WP_138171388.1 PulJ/GspJ family protein Machinery gene
  FGK83_RS00270 (NCTC8468_00052) comN 56525..57037 (-) 513 WP_138171389.1 pilus assembly FimT family protein Machinery gene
  FGK83_RS00275 (NCTC8468_00053) suhB 57237..58040 (+) 804 WP_005631453.1 inositol-1-monophosphatase -
  FGK83_RS00280 (NCTC8468_00054) nrfE 58148..60055 (+) 1908 WP_138171390.1 heme lyase NrfEFG subunit NrfE -
  FGK83_RS00285 (NCTC8468_00055) - 60055..60585 (+) 531 WP_116966654.1 DsbE family thiol:disulfide interchange protein -
  FGK83_RS00290 (NCTC8468_00056) nrfF 60582..61727 (+) 1146 WP_138171391.1 heme lyase NrfEFG subunit NrfF -

Sequence

Protein


Download         Length: 170 a.a.        Molecular weight: 19758.96 Da        Isoelectric Point: 8.9781

>NTDB_id=1126731 FGK83_RS00270 WP_138171389.1 56525..57037(-) (comN) [Haemophilus influenzae strain NCTC8468]
MQKGVTLVELLIGLAIISIALNFAVPLWQTDSPKTILAKEQHRLYLFLRQVQARVENSSGVWFLLINRNLATQQWCLTAQ
VKNNQTCDCLNPINCPKEVYAHFYYPYFPNKTMIQSHHIYPKEITRFDGIRNTIVTRCFILQAENERTLFLFFNVGSIRL
KTNQFDSACN

Nucleotide


Download         Length: 513 bp        

>NTDB_id=1126731 FGK83_RS00270 WP_138171389.1 56525..57037(-) (comN) [Haemophilus influenzae strain NCTC8468]
ATGCAGAAAGGTGTGACATTAGTGGAATTATTAATTGGGTTAGCCATTATCAGCATTGCGCTGAATTTTGCCGTGCCATT
ATGGCAAACCGATTCACCTAAAACGATTTTAGCCAAAGAGCAACATCGCCTGTATTTATTTCTACGACAAGTTCAGGCTC
GTGTAGAAAATTCATCGGGAGTGTGGTTTTTACTTATCAATCGGAACCTTGCGACACAACAATGGTGCTTAACGGCACAA
GTAAAAAATAACCAAACTTGTGATTGTTTAAATCCGATAAATTGCCCGAAAGAGGTTTATGCACATTTTTACTATCCTTA
TTTTCCTAATAAAACGATGATTCAAAGCCATCATATTTATCCAAAAGAAATCACGAGATTTGATGGCATTCGTAATACTA
TCGTTACTCGTTGCTTTATTTTGCAAGCAGAAAATGAACGTACGTTATTTTTATTTTTCAATGTTGGCAGTATTCGTTTA
AAAACCAATCAATTTGATAGTGCTTGTAATTAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(2-21)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comN Haemophilus influenzae Rd KW20

96.471

100

0.965

Multiple sequence alignment