Detailed information    

insolico Bioinformatically predicted

Overview

Name   comP   Type   Machinery gene
Locus tag   FGK83_RS00260 Genome accession   NZ_LR590465
Coordinates   55126..55809 (-) Length   227 a.a.
NCBI ID   WP_138171387.1    Uniprot ID   -
Organism   Haemophilus influenzae strain NCTC8468     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 50126..60809
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FGK83_RS00245 (NCTC8468_00047) nrdR 50915..51364 (-) 450 WP_138171385.1 transcriptional regulator NrdR -
  FGK83_RS00250 (NCTC8468_00048) recC 51426..54800 (-) 3375 WP_138171386.1 exodeoxyribonuclease V subunit gamma -
  FGK83_RS00255 (NCTC8468_00049) comQ 54846..55133 (-) 288 WP_054249354.1 DUF5374 domain-containing protein Machinery gene
  FGK83_RS00260 (NCTC8468_00050) comP 55126..55809 (-) 684 WP_138171387.1 DUF2572 family protein Machinery gene
  FGK83_RS00265 (NCTC8468_00051) comO 55806..56525 (-) 720 WP_138171388.1 PulJ/GspJ family protein Machinery gene
  FGK83_RS00270 (NCTC8468_00052) comN 56525..57037 (-) 513 WP_138171389.1 pilus assembly FimT family protein Machinery gene
  FGK83_RS00275 (NCTC8468_00053) suhB 57237..58040 (+) 804 WP_005631453.1 inositol-1-monophosphatase -
  FGK83_RS00280 (NCTC8468_00054) nrfE 58148..60055 (+) 1908 WP_138171390.1 heme lyase NrfEFG subunit NrfE -
  FGK83_RS00285 (NCTC8468_00055) - 60055..60585 (+) 531 WP_116966654.1 DsbE family thiol:disulfide interchange protein -

Sequence

Protein


Download         Length: 227 a.a.        Molecular weight: 25483.29 Da        Isoelectric Point: 9.3070

>NTDB_id=1126729 FGK83_RS00260 WP_138171387.1 55126..55809(-) (comP) [Haemophilus influenzae strain NCTC8468]
MTTQKGIITLTILIFISGLLSVILLLDDSHLSFFRAQQNQRKLYVERTLQLQRITALKKQTACLDLPLNNNESVKQISIT
LDGATDSIQYFLWCERMSLFKKSPKKGDNQGALKDFIHTEKLTDFRPHFSSPPKILNANKTPKLYWFSDSQAEVEINGTV
SAVLIAEGDLKLTGKGRISGTVITNGNLTLDGVTLAYGKKTVVALVQQYSQWQLAEKSWSDFNVQDE

Nucleotide


Download         Length: 684 bp        

>NTDB_id=1126729 FGK83_RS00260 WP_138171387.1 55126..55809(-) (comP) [Haemophilus influenzae strain NCTC8468]
ATGACAACACAAAAAGGCATTATCACGCTGACTATTCTGATTTTTATTTCAGGCTTATTAAGCGTAATCTTATTGTTAGA
TGATAGCCATTTAAGTTTTTTTCGGGCGCAACAAAATCAACGAAAACTGTATGTGGAAAGAACATTACAATTACAAAGAA
TAACAGCCTTGAAAAAACAAACTGCCTGCCTTGATTTACCCTTAAATAATAATGAAAGTGTAAAGCAAATCAGCATTACG
CTTGATGGTGCCACAGATTCAATTCAATATTTTCTTTGGTGTGAAAGAATGAGCCTATTTAAAAAATCGCCTAAAAAGGG
AGATAATCAAGGTGCATTGAAAGATTTCATTCACACAGAAAAACTTACAGATTTTCGACCGCACTTTTCTTCCCCTCCTA
AAATTTTAAATGCGAATAAAACGCCTAAACTTTATTGGTTTTCAGATTCACAAGCAGAGGTTGAAATTAATGGCACCGTG
TCTGCTGTATTAATTGCAGAGGGCGATTTAAAATTGACTGGCAAAGGGAGGATTAGTGGCACAGTGATTACCAACGGGAA
TTTAACTTTAGATGGCGTAACTTTAGCTTATGGGAAAAAGACGGTGGTCGCTTTAGTGCAACAATATAGTCAGTGGCAGT
TAGCAGAAAAAAGTTGGAGTGATTTTAATGTTCAGGATGAATAA

Domains

Predicted by InterproScan.

Protein of unknown function (DUF2572) (DUF2572)

(5-223)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comP Haemophilus influenzae Rd KW20

90.749

100

0.907

Multiple sequence alignment