Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   FGL28_RS17005 Genome accession   NZ_LR588411
Coordinates   3522671..3523267 (+) Length   198 a.a.
NCBI ID   WP_062914558.1    Uniprot ID   -
Organism   Klebsiella quasipneumoniae strain NCTC9170     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 3517671..3528267
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FGL28_RS16980 (NCTC9170_03341) - 3517793..3519550 (-) 1758 WP_122543105.1 Lon protease family protein -
  FGL28_RS16985 (NCTC9170_03342) matP 3519736..3520188 (+) 453 WP_002898404.1 macrodomain Ter protein MatP -
  FGL28_RS16990 (NCTC9170_03343) ompA 3520390..3521460 (-) 1071 WP_002898408.1 porin OmpA -
  FGL28_RS16995 (NCTC9170_03344) sulA 3521813..3522322 (-) 510 WP_122543103.1 SOS-induced cell division inhibitor SulA -
  FGL28_RS25475 - 3522348..3522653 (+) 306 WP_162994648.1 hypothetical protein -
  FGL28_RS17005 (NCTC9170_03345) sxy/tfoX 3522671..3523267 (+) 597 WP_062914558.1 TfoX/Sxy family DNA transformation protein Regulator
  FGL28_RS17010 (NCTC9170_03346) yccS 3523278..3525413 (-) 2136 WP_064150370.1 YccS family putative transporter -
  FGL28_RS17015 (NCTC9170_03347) - 3525431..3525877 (-) 447 WP_004201437.1 YccF domain-containing protein -
  FGL28_RS17020 (NCTC9170_03348) helD 3526002..3528056 (+) 2055 WP_138100162.1 DNA helicase IV -

Sequence

Protein


Download         Length: 198 a.a.        Molecular weight: 22594.35 Da        Isoelectric Point: 10.2926

>NTDB_id=1126652 FGL28_RS17005 WP_062914558.1 3522671..3523267(+) (sxy/tfoX) [Klebsiella quasipneumoniae strain NCTC9170]
MKKLVCPRLPQFQACVSPLGQLHSRPLFGGYSLAIEDTVFAMVAEGNIYLKACEQSAAYRVEHHNPLLMLRRHGRIVPLK
YYQIDDALWRDEKQLFRLSLMSWQSAQREKCRRRSSGRLKDLPNISFHMELQLIHSGIPDVLALREVGARRAWLKLRENN
ASLSHNVLLALEGAIVGVHAAALPTPRRQELLEWAAAR

Nucleotide


Download         Length: 597 bp        

>NTDB_id=1126652 FGL28_RS17005 WP_062914558.1 3522671..3523267(+) (sxy/tfoX) [Klebsiella quasipneumoniae strain NCTC9170]
ATGAAAAAACTTGTATGTCCGCGGCTCCCGCAATTTCAGGCCTGCGTCTCACCGCTGGGTCAACTTCACTCTCGCCCCCT
GTTTGGCGGCTACAGCCTGGCTATCGAAGATACCGTGTTTGCGATGGTGGCAGAGGGAAATATTTATCTGAAAGCCTGCG
AGCAGAGCGCTGCCTATCGGGTAGAACACCATAATCCTTTATTGATGCTGCGCCGACATGGGCGCATCGTGCCGCTAAAG
TATTATCAAATTGACGATGCCTTGTGGCGCGATGAGAAACAGCTTTTCCGCTTATCGCTGATGTCGTGGCAGAGCGCCCA
GCGTGAAAAATGTCGCCGCCGGTCGTCGGGACGCCTGAAAGATTTACCTAATATCAGCTTTCATATGGAATTGCAGCTGA
TTCACTCGGGCATACCAGATGTGTTAGCACTACGGGAGGTGGGCGCCCGCCGGGCCTGGCTAAAGCTGCGTGAGAACAAT
GCTTCCCTATCACACAACGTCTTGCTGGCGCTGGAGGGGGCTATCGTTGGCGTCCATGCCGCCGCGCTCCCGACGCCACG
GCGTCAGGAGCTTCTGGAATGGGCGGCTGCCCGCTAG

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(16-105)

TfoX C-terminal domain (TfoX_C)

(117-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

50.769

98.485

0.5

Multiple sequence alignment