Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilS   Type   Regulator
Locus tag   PSYRB_RS03925 Genome accession   NZ_CP005969
Coordinates   886108..887700 (-) Length   530 a.a.
NCBI ID   WP_032654632.1    Uniprot ID   -
Organism   Pseudomonas syringae pv. syringae B301D     
Function   regulate pilin expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 881108..892700
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PSYRB_RS03910 (PsyrB_03960) - 883110..883511 (+) 402 WP_011266587.1 type IV pilin protein -
  PSYRB_RS03915 (PsyrB_03965) thiO 883538..884641 (+) 1104 WP_032654635.1 glycine oxidase ThiO -
  PSYRB_RS03920 (PsyrB_03970) pilR 884768..886105 (-) 1338 WP_024642308.1 sigma-54 dependent transcriptional regulator Regulator
  PSYRB_RS03925 (PsyrB_03975) pilS 886108..887700 (-) 1593 WP_032654632.1 PAS domain-containing sensor histidine kinase Regulator
  PSYRB_RS03930 (PsyrB_03980) - 887690..887929 (-) 240 WP_032624946.1 PP0621 family protein -
  PSYRB_RS03935 (PsyrB_03985) - 888050..889072 (-) 1023 WP_003371138.1 outer membrane protein assembly factor BamD -
  PSYRB_RS03940 (PsyrB_03990) rluD 889222..890184 (+) 963 WP_011266591.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  PSYRB_RS03945 (PsyrB_03995) pgeF 890181..890909 (+) 729 WP_024659983.1 peptidoglycan editing factor PgeF -

Sequence

Protein


Download         Length: 530 a.a.        Molecular weight: 57972.90 Da        Isoelectric Point: 7.0011

>NTDB_id=112663 PSYRB_RS03925 WP_032654632.1 886108..887700(-) (pilS) [Pseudomonas syringae pv. syringae B301D]
MTADSPSLVSPQAQRILRLYHLYRLTIGVVLVLLISSSLETELLQLANPNLFRSGCWLYLVFNILVVVLLERPSRQAQFF
GLAMTDAIMLSALFYAAGGPSSGIGNLLIASVAISNVLLRGRIGLLIAAVSAIGIIYLTFYISFGTPSVSNDYVQAGSLG
ALCFAAALLVQALTARMQVSEVLAEQRAADVDSLEALNALILQRMRTGILVLDANHQVLLANQGALNLLGQEQLVGQIID
TCSPHLVERLRQWLVNPIMVPRSITTAPVGLVLQPSFATLNRGDQRQTLVFLEDLSQIAHQAQQLKLAALGRLTAGIAHE
IRNPLGAVSHAAQLLNESEELSAADRRLGQIIHEQSGRIDRVIENVLQLSRRREAQPELLDLKTWLEHFVAEFRSSAAPN
QKIHVDISPGTLTTRMDSGQLTQIMTNLVQNGLRYSGKNHPSAQVWLKLHNDQKSDLPTLEVLDDGPGVSEQHLSKMFEP
FFTTESKGTGLGLYLSRELCESNQAHLEYAPRPTGGSCLRITFAHPFKTS

Nucleotide


Download         Length: 1593 bp        

>NTDB_id=112663 PSYRB_RS03925 WP_032654632.1 886108..887700(-) (pilS) [Pseudomonas syringae pv. syringae B301D]
GTGACCGCTGACTCACCGTCCCTTGTCAGCCCGCAGGCACAGCGGATTCTACGGCTGTACCACCTCTACCGACTGACCAT
CGGCGTTGTACTGGTTCTGTTGATTTCCAGCAGCCTGGAAACCGAGCTGCTGCAACTGGCCAACCCGAACCTGTTCCGCT
CGGGCTGCTGGTTGTATCTGGTGTTCAACATTCTGGTCGTCGTGCTGCTGGAACGCCCCAGCCGTCAGGCACAGTTTTTC
GGCCTGGCGATGACCGACGCGATCATGCTCTCCGCACTGTTCTACGCAGCCGGCGGGCCTTCCAGCGGTATCGGCAACCT
GTTGATTGCCTCGGTGGCGATCAGCAACGTGTTGCTGCGCGGCCGTATCGGCTTGTTGATCGCTGCGGTTTCGGCCATCG
GCATCATCTACCTGACGTTCTACATCAGCTTCGGCACACCCTCGGTTTCCAACGACTACGTGCAGGCTGGCTCGCTGGGC
GCCTTGTGCTTCGCCGCCGCCCTGCTGGTGCAGGCACTGACAGCGCGCATGCAGGTCAGCGAGGTGCTGGCCGAACAGCG
CGCGGCGGATGTCGACAGCCTTGAAGCACTCAACGCGCTGATCCTGCAACGCATGCGTACCGGCATTCTGGTGCTGGATG
CCAACCATCAGGTGCTGCTGGCCAATCAGGGGGCCTTGAACCTGCTGGGCCAGGAACAACTGGTCGGCCAGATCATCGAC
ACCTGCTCGCCACATCTGGTCGAACGCCTGCGCCAGTGGCTCGTCAACCCGATCATGGTGCCGCGCAGCATCACCACCGC
CCCCGTCGGGCTGGTGCTGCAACCGAGCTTTGCCACACTCAACCGTGGCGATCAGCGTCAGACGCTGGTTTTTCTCGAAG
ACCTGTCGCAGATCGCCCATCAGGCGCAGCAGCTCAAGCTTGCCGCGCTGGGGCGCCTGACCGCCGGGATTGCCCATGAG
ATACGCAACCCGCTGGGCGCCGTCAGTCATGCGGCGCAGTTGCTTAATGAATCGGAAGAGCTCAGTGCAGCGGATCGACG
CTTGGGGCAGATCATTCATGAGCAGTCGGGACGCATTGATAGGGTCATCGAAAATGTCCTGCAGTTGTCACGCAGACGCG
AAGCGCAACCCGAACTGCTCGATCTGAAAACCTGGCTGGAACACTTTGTCGCTGAATTTCGCAGTTCCGCTGCGCCCAAT
CAGAAGATTCATGTCGACATCAGCCCTGGCACGCTGACAACCCGCATGGATTCCGGACAACTGACGCAAATCATGACCAA
CCTGGTGCAGAACGGCCTGCGCTACAGCGGCAAGAATCATCCGTCAGCGCAGGTCTGGCTGAAACTACACAATGACCAGA
AGAGCGACCTGCCCACACTGGAAGTGCTGGACGACGGGCCGGGGGTCAGCGAGCAACACCTGAGCAAAATGTTCGAACCG
TTTTTCACCACAGAAAGCAAAGGCACCGGCCTTGGTCTATATCTGTCACGTGAACTGTGTGAAAGCAATCAGGCGCATTT
GGAATACGCGCCCCGCCCCACGGGTGGCAGTTGCCTGCGCATTACCTTCGCCCACCCGTTCAAGACGAGCTGA

Domains

Predicted by InterproScan.

Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase (HATPase_c)

(417-523)

His Kinase A (phospho-acceptor) domain (HisKA)

(309-373)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilS Pseudomonas aeruginosa PAK

61.017

100

0.611

Multiple sequence alignment