Detailed information    

insolico Bioinformatically predicted

Overview

Name   spo0J   Type   Regulator
Locus tag   E0F34_RS00035 Genome accession   NZ_LR536843
Coordinates   2830..3588 (+) Length   252 a.a.
NCBI ID   WP_000410378.1    Uniprot ID   A0A064C0A8
Organism   Streptococcus pneumoniae strain GPSC55 substr. ST3774 isolate b04a6400-1f66-11e7-b93e-3c4a9275d6c8     
Function   require for competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 1..8588
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  E0F34_RS00005 - 1..128 (+) 128 Protein_0 IS30 family transposase -
  E0F34_RS00010 (SAMEA104035599_00001) comD 139..501 (-) 363 Protein_1 competence system sensor histidine kinase ComD -
  E0F34_RS00015 (SAMEA104035599_00002) comC/comC1 522..647 (-) 126 WP_000799689.1 competence-stimulating peptide ComC Regulator
  E0F34_RS00025 (SAMEA104035599_00004) rlmH 929..1408 (-) 480 WP_000695929.1 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH -
  E0F34_RS00030 (SAMEA104035599_00005) htrA 1591..2772 (+) 1182 WP_000681601.1 S1C family serine protease Regulator
  E0F34_RS00035 (SAMEA104035599_00006) spo0J 2830..3588 (+) 759 WP_000410378.1 ParB/RepB/Spo0J family partition protein Regulator
  E0F34_RS00040 (SAMEA104035599_00007) dnaA 3801..5162 (+) 1362 WP_000660615.1 chromosomal replication initiator protein DnaA -
  E0F34_RS00045 (SAMEA104035599_00008) dnaN 5321..6457 (+) 1137 WP_000581157.1 DNA polymerase III subunit beta -
  E0F34_RS00050 (SAMEA104035599_00009) - 6522..6716 (+) 195 WP_000285194.1 DUF951 domain-containing protein -
  E0F34_RS00055 (SAMEA104035599_00010) ychF 6800..7915 (+) 1116 WP_061384530.1 redox-regulated ATPase YchF -
  E0F34_RS00060 (SAMEA104035599_00011) pth 7986..8555 (+) 570 WP_000163932.1 aminoacyl-tRNA hydrolase -

Sequence

Protein


Download         Length: 252 a.a.        Molecular weight: 29153.50 Da        Isoelectric Point: 9.0667

>NTDB_id=1126530 E0F34_RS00035 WP_000410378.1 2830..3588(+) (spo0J) [Streptococcus pneumoniae strain GPSC55 substr. ST3774 isolate b04a6400-1f66-11e7-b93e-3c4a9275d6c8]
MEKFEMISITDIQKNPYQPRKEFDREKLDELAQSIKENGVIQPIIVRQSPVIGYEILAGERRYRASLLAGLRSIPAVVKQ
ISDQEMMVQSIIENLQRENLNPIEEARAYESLVEKGFTHAEIADKMGKSRPYISNSIRLLSLPEQILSEVENGKLSQAHA
RSLVGLNKEQQDYFFQRIIEEDISVRKLEALLTEKKQKKQQKTNHFIQNEEKQLRKLLGLDVEIKLSKKDSGKIIISFSN
QEEYSRIINSLK

Nucleotide


Download         Length: 759 bp        

>NTDB_id=1126530 E0F34_RS00035 WP_000410378.1 2830..3588(+) (spo0J) [Streptococcus pneumoniae strain GPSC55 substr. ST3774 isolate b04a6400-1f66-11e7-b93e-3c4a9275d6c8]
ATGGAAAAATTTGAAATGATTTCTATCACAGATATACAAAAAAATCCCTATCAACCCCGAAAAGAATTTGATAGAGAAAA
ACTAGATGAACTAGCACAGTCTATCAAAGAAAATGGGGTCATTCAACCGATTATTGTTCGTCAATCTCCTGTTATTGGTT
ATGAAATCCTTGCAGGAGAGAGACGCTATCGGGCTTCACTTTTAGCTGGTCTACGGTCTATCCCAGCTGTTGTTAAACAG
ATTTCAGACCAAGAGATGATGGTCCAGTCCATTATTGAAAATTTACAGAGAGAAAATTTAAACCCAATAGAAGAAGCACG
CGCCTATGAATCTCTCGTAGAGAAAGGATTCACCCATGCTGAAATTGCAGATAAGATGGGCAAGTCTCGTCCATATATCA
GCAACTCCATTCGTTTACTTTCCTTGCCAGAACAGATTCTTTCAGAAGTAGAAAATGGCAAACTATCACAAGCCCATGCG
CGTTCCCTAGTTGGGTTAAATAAGGAACAACAAGACTATTTCTTTCAACGGATTATAGAAGAAGATATTTCTGTAAGGAA
ATTAGAAGCTCTTCTGACAGAGAAAAAACAAAAGAAACAGCAAAAAACTAATCATTTCATACAAAATGAAGAAAAACAGT
TAAGAAAACTACTCGGATTAGATGTAGAAATTAAACTATCTAAAAAAGACAGTGGAAAAATCATTATTTCTTTTTCAAAT
CAAGAAGAATATAGTAGAATTATCAACAGCCTGAAATAA

Domains

Predicted by InterproScan.

ParB/Sulfiredoxin domain (ParB_N)

(6-94)

HTH domain found in ParB protein (HTH_ParB)

(144-192)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A064C0A8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  spo0J Streptococcus mutans UA159

50.593

100

0.508

Multiple sequence alignment