Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   E4Z82_RS16275 Genome accession   NZ_LR536431
Coordinates   3258675..3259304 (-) Length   209 a.a.
NCBI ID   WP_000839153.1    Uniprot ID   A0A9Q6Y251
Organism   Escherichia coli isolate f9610206-5e81-11e8-bf7f-3c4a9275d6c8     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 3253675..3264304
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  E4Z82_RS16260 helD 3253917..3255971 (-) 2055 WP_000420537.1 DNA helicase IV -
  E4Z82_RS16265 yccF 3256094..3256540 (+) 447 WP_001261235.1 YccF domain-containing protein -
  E4Z82_RS16270 yccS 3256550..3258712 (+) 2163 WP_000875023.1 YccS family putative transporter -
  E4Z82_RS16275 sxy/tfoX 3258675..3259304 (-) 630 WP_000839153.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  E4Z82_RS16280 sulA 3259523..3260032 (+) 510 WP_000288710.1 SOS-induced cell division inhibitor SulA -
  E4Z82_RS16285 ompA 3260389..3261429 (+) 1041 WP_000750416.1 porin OmpA -
  E4Z82_RS16290 matP 3261505..3261957 (-) 453 WP_000877161.1 macrodomain Ter protein MatP -
  E4Z82_RS16295 ycbZ 3262143..3263903 (+) 1761 WP_000156470.1 Lon protease family protein -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24147.02 Da        Isoelectric Point: 9.2180

>NTDB_id=1126510 E4Z82_RS16275 WP_000839153.1 3258675..3259304(-) (sxy/tfoX) [Escherichia coli isolate f9610206-5e81-11e8-bf7f-3c4a9275d6c8]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=1126510 E4Z82_RS16275 WP_000839153.1 3258675..3259304(-) (sxy/tfoX) [Escherichia coli isolate f9610206-5e81-11e8-bf7f-3c4a9275d6c8]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGCAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGTGCCATTATCGGCATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCACTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

100

100

1

Multiple sequence alignment