Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   E4Z69_RS21360 Genome accession   NZ_LR536430
Coordinates   4328898..4329527 (+) Length   209 a.a.
NCBI ID   WP_000839153.1    Uniprot ID   A0A9Q6Y251
Organism   Escherichia coli isolate f974b26a-5e81-11e8-bf7f-3c4a9275d6c8     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 4323898..4334527
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  E4Z69_RS21340 ycbZ 4324288..4326048 (-) 1761 WP_000156516.1 Lon protease family protein -
  E4Z69_RS21345 matP 4326234..4326686 (+) 453 WP_000877158.1 macrodomain Ter protein MatP -
  E4Z69_RS21350 ompA 4326761..4327813 (-) 1053 WP_001307702.1 porin OmpA -
  E4Z69_RS21355 sulA 4328170..4328679 (-) 510 WP_000288710.1 SOS-induced cell division inhibitor SulA -
  E4Z69_RS21360 sxy/tfoX 4328898..4329527 (+) 630 WP_000839153.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  E4Z69_RS21365 yccS 4329490..4331652 (-) 2163 WP_000875023.1 YccS family putative transporter -
  E4Z69_RS21370 yccF 4331662..4332108 (-) 447 WP_001261235.1 YccF domain-containing protein -
  E4Z69_RS21375 helD 4332231..4334285 (+) 2055 WP_000420536.1 DNA helicase IV -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24147.02 Da        Isoelectric Point: 9.2180

>NTDB_id=1126495 E4Z69_RS21360 WP_000839153.1 4328898..4329527(+) (sxy/tfoX) [Escherichia coli isolate f974b26a-5e81-11e8-bf7f-3c4a9275d6c8]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=1126495 E4Z69_RS21360 WP_000839153.1 4328898..4329527(+) (sxy/tfoX) [Escherichia coli isolate f974b26a-5e81-11e8-bf7f-3c4a9275d6c8]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGCAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGTGCCATTATCGGCATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

100

100

1

Multiple sequence alignment