Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   OU5_RS21460 Genome accession   NZ_CP005960
Coordinates   4811778..4813145 (+) Length   455 a.a.
NCBI ID   WP_010467488.1    Uniprot ID   A0A024EEL0
Organism   Pseudomonas mandelii JR-1     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 4806778..4818145
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OU5_RS21435 - 4807008..4807718 (-) 711 WP_042932543.1 autoinducer binding domain-containing protein -
  OU5_RS21440 (OU5_4296) - 4808064..4808840 (+) 777 WP_010467481.1 ferredoxin--NADP reductase -
  OU5_RS21445 (OU5_4297) mscL 4808889..4809302 (-) 414 WP_010467482.1 large-conductance mechanosensitive channel protein MscL -
  OU5_RS21450 (OU5_4298) katB 4809588..4811129 (+) 1542 WP_010467484.1 catalase KatB -
  OU5_RS21455 (OU5_4299) - 4811190..4811732 (+) 543 WP_010467486.1 ankyrin repeat domain-containing protein -
  OU5_RS21460 (OU5_4300) radA 4811778..4813145 (+) 1368 WP_010467488.1 DNA repair protein RadA Machinery gene
  OU5_RS21465 (OU5_4301) - 4813274..4813642 (-) 369 WP_010467490.1 PilZ domain-containing protein -
  OU5_RS21470 (OU5_4302) - 4813802..4815868 (+) 2067 WP_010467492.1 carbon starvation CstA family protein -
  OU5_RS21475 (OU5_4303) - 4815883..4816080 (+) 198 WP_010467494.1 YbdD/YjiX family protein -
  OU5_RS21480 (OU5_4304) yjiA 4816243..4817211 (+) 969 WP_010467496.1 GTPase -
  OU5_RS21485 (OU5_4305) - 4817311..4817994 (-) 684 WP_010467498.1 GntR family transcriptional regulator -

Sequence

Protein


Download         Length: 455 a.a.        Molecular weight: 48744.25 Da        Isoelectric Point: 6.8987

>NTDB_id=112645 OU5_RS21460 WP_010467488.1 4811778..4813145(+) (radA) [Pseudomonas mandelii JR-1]
MAKAKRMYGCTECGSTFPKWAGQCGECGAWNTLTETMVESGGAAAPSGRTGWTGQQAQIKTLAEVSVEEIPRFSTASSEL
DRVLGGGLVDGSVVLIGGDPGIGKSTILLQTLCNLAKVMPALYVTGEESQQQVAMRARRLGLPQDQLRVMTETCIETIIA
TARVEKPKVMVIDSIQTIFTEQLQSAPGGVSQVRESAALLVRYAKQSGTAIFLVGHVTKEGALAGPRVLEHMVDTVLYFE
GESDGRLRLLRAVKNRFGAVNELGVFGMTDKGLKEVSNPSAIFLTRAQEEVPGSVVMATWEGTRPMLVEVQALVDDSHLA
NPRRVTLGLDQNRLAMLLAVLHRHGGIPTHDQDVFLNVVGGVKVLETASDLALMAAVMSSLRNRPLPHDLLVFGEVGLSG
EVRPVPSGQERLKEAAKHGFKRAIVPKGNAPKEAPPGLQIIAVTRLEQALDALFE

Nucleotide


Download         Length: 1368 bp        

>NTDB_id=112645 OU5_RS21460 WP_010467488.1 4811778..4813145(+) (radA) [Pseudomonas mandelii JR-1]
ATGGCCAAGGCCAAGCGCATGTACGGCTGCACCGAGTGCGGCTCAACCTTCCCCAAGTGGGCCGGCCAGTGCGGCGAGTG
CGGGGCCTGGAACACGCTGACCGAAACCATGGTCGAGAGCGGCGGCGCCGCAGCACCCAGCGGTCGCACCGGTTGGACCG
GCCAGCAGGCTCAGATCAAGACCCTGGCCGAAGTCAGCGTCGAAGAGATTCCGCGCTTCTCCACCGCGTCCAGTGAACTC
GATCGGGTGTTGGGCGGTGGCCTGGTGGATGGTTCGGTGGTGCTGATCGGCGGTGATCCGGGCATCGGCAAGTCGACCAT
TCTCCTGCAAACCTTGTGCAACCTCGCCAAAGTCATGCCGGCGCTGTACGTCACCGGTGAAGAATCCCAGCAGCAGGTGG
CCATGCGCGCCCGACGTCTGGGCCTGCCGCAGGATCAGCTGCGGGTGATGACCGAAACCTGCATCGAAACCATCATTGCC
ACCGCCCGGGTCGAAAAGCCCAAGGTCATGGTGATCGACTCCATTCAGACCATCTTCACCGAACAACTGCAATCGGCACC
GGGCGGCGTGTCGCAGGTTAGGGAAAGTGCCGCGTTGCTGGTGCGGTATGCCAAGCAGAGCGGCACGGCGATTTTCCTGG
TCGGCCACGTGACAAAAGAAGGCGCCTTGGCCGGGCCGCGCGTGCTGGAGCACATGGTCGATACGGTGCTGTATTTCGAA
GGCGAATCCGATGGACGGCTGCGTCTGTTGCGCGCGGTGAAAAACCGTTTCGGCGCTGTCAACGAGTTGGGCGTTTTCGG
CATGACCGACAAGGGCCTGAAAGAAGTCTCCAACCCGTCAGCGATTTTTCTCACTCGTGCGCAAGAAGAAGTTCCCGGCA
GCGTGGTCATGGCGACGTGGGAAGGAACGCGGCCGATGCTGGTGGAAGTCCAGGCGCTGGTGGATGACAGCCATTTGGCG
AACCCGCGCCGGGTCACGCTGGGGCTGGATCAGAATCGTCTGGCGATGTTGCTTGCGGTACTGCATCGTCACGGCGGGAT
TCCGACCCACGATCAGGACGTCTTCCTCAACGTGGTCGGCGGGGTGAAGGTGCTGGAAACGGCCTCCGACCTGGCGTTGA
TGGCCGCGGTCATGTCCAGTTTGCGCAACCGCCCGCTGCCCCATGATTTGCTGGTGTTCGGTGAAGTCGGGCTGTCGGGC
GAAGTGCGCCCGGTGCCGAGTGGCCAGGAACGCTTGAAGGAAGCCGCCAAGCACGGCTTCAAACGCGCCATCGTGCCCAA
GGGCAATGCGCCCAAGGAAGCGCCGCCGGGGTTGCAGATTATTGCCGTGACCCGTCTGGAGCAGGCCCTCGACGCATTGT
TCGAGTAG

Domains

Predicted by InterproScan.

AAA domain (AAA_25)

(74-221)

Subunit ChlI of Mg-chelatase (ChlI)

(353-429)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A024EEL0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

48.796

100

0.49
  radA Streptococcus pneumoniae Rx1

46.739

100

0.473
  radA Streptococcus pneumoniae R6

46.739

100

0.473
  radA Streptococcus pneumoniae TIGR4

46.739

100

0.473
  radA Streptococcus pneumoniae D39

46.739

100

0.473
  radA Streptococcus mitis SK321

46.93

100

0.47
  radA Streptococcus mitis NCTC 12261

46.711

100

0.468

Multiple sequence alignment