Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrP   Type   Regulator
Locus tag   E0F40_RS12220 Genome accession   NZ_LR216065
Coordinates   1757070..1757891 (-) Length   273 a.a.
NCBI ID   WP_000601687.1    Uniprot ID   -
Organism   Streptococcus pneumoniae strain GPSC18 substr. ST13 isolate 55896440-41bd-11e5-998e-3c4a9275d6c6     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 1752070..1762891
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  E0F40_RS09380 (SAMEA3714487_01779) - 1752562..1752879 (-) 318 WP_000615767.1 thioredoxin family protein -
  E0F40_RS09385 (SAMEA3714487_01780) - 1752876..1753175 (-) 300 WP_001013974.1 DUF4651 domain-containing protein -
  E0F40_RS12360 - 1753269..1753400 (+) 132 WP_001811306.1 hypothetical protein -
  E0F40_RS12210 - 1753425..1753505 (-) 81 WP_223200442.1 hypothetical protein -
  E0F40_RS09390 - 1753512..1753703 (-) 192 WP_000291826.1 cell wall-binding protein -
  E0F40_RS09395 (SAMEA3714487_01781) - 1753864..1754538 (-) 675 WP_000725742.1 LiaF transmembrane domain-containing protein -
  E0F40_RS09400 (SAMEA3714487_01782) - 1754544..1754990 (-) 447 WP_000776587.1 LytTR family DNA-binding domain-containing protein -
  E0F40_RS09405 (SAMEA3714487_01783) - 1755104..1755607 (-) 504 WP_000800947.1 phosphatase PAP2 family protein -
  E0F40_RS09410 (SAMEA3714487_01784) - 1755604..1755966 (-) 363 WP_000078805.1 DUF2200 domain-containing protein -
  E0F40_RS12215 (SAMEA3714487_01785) rcrQ 1756032..1757063 (-) 1032 WP_000506416.1 ABC transporter ATP-binding protein Regulator
  E0F40_RS12220 (SAMEA3714487_01786) rcrP 1757070..1757891 (-) 822 WP_000601687.1 ABC transporter permease Regulator
  E0F40_RS09420 (SAMEA3714487_01787) - 1757908..1758377 (-) 470 Protein_1760 MarR family winged helix-turn-helix transcriptional regulator -
  E0F40_RS09430 (SAMEA3714487_01788) - 1758501..1759217 (-) 717 WP_000532876.1 YebC/PmpR family DNA-binding transcriptional regulator -
  E0F40_RS09440 (SAMEA3714487_01789) ply 1760098..1761513 (-) 1416 WP_001284361.1 cholesterol-dependent cytolysin pneumolysin -
  E0F40_RS09445 (SAMEA3714487_01790) - 1761524..1761934 (-) 411 WP_000595758.1 hypothetical protein -
  E0F40_RS09450 (SAMEA3714487_01791) - 1761927..1762535 (-) 609 WP_000083614.1 hypothetical protein -

Sequence

Protein


Download         Length: 273 a.a.        Molecular weight: 30557.23 Da        Isoelectric Point: 5.2610

>NTDB_id=1126391 E0F40_RS12220 WP_000601687.1 1757070..1757891(-) (rcrP) [Streptococcus pneumoniae strain GPSC18 substr. ST13 isolate 55896440-41bd-11e5-998e-3c4a9275d6c6]
MILLAILFTCFSVYLELEVPTYISKITDLLGSQGTNLDELWQPASMMMGMPFLAFLSVVAVGFFASRVAASYTSRLRSDI
FNRVLDYSQTEIKKFSIPSLLMRTTNDITQVQMLITMDLQVVTCGPIMAIWAIGKILGHSEYWLWAVLVAVIVNVLMTTV
LMTLAFPKQSLIQGLIDKLNSITRESLTGIRVVRAYNAEDYQNEKFAAVNDELTRLNLFVNRLMAILNPIMMGISSGLSV
AIYWIGAYVINDAAPIARLPLFSDMIVFMSYAM

Nucleotide


Download         Length: 822 bp        

>NTDB_id=1126391 E0F40_RS12220 WP_000601687.1 1757070..1757891(-) (rcrP) [Streptococcus pneumoniae strain GPSC18 substr. ST13 isolate 55896440-41bd-11e5-998e-3c4a9275d6c6]
ATGATTTTACTAGCCATTCTCTTTACTTGCTTTTCGGTCTATCTAGAGTTGGAAGTGCCGACCTATATCTCGAAAATTAC
GGATTTGCTAGGTAGTCAAGGAACTAATTTAGATGAGTTGTGGCAGCCGGCAAGCATGATGATGGGAATGCCCTTTCTTG
CCTTCTTGTCCGTAGTTGCAGTTGGATTTTTTGCATCCCGAGTGGCGGCTTCTTATACTAGTAGGCTGAGAAGTGATATT
TTTAACCGAGTTTTGGATTACTCGCAGACAGAGATTAAGAAATTTTCAATTCCTAGCCTCTTGATGCGTACTACCAATGA
CATTACTCAAGTTCAAATGTTGATTACTATGGACTTGCAAGTGGTAACGTGTGGTCCAATTATGGCTATCTGGGCTATTG
GGAAGATTTTAGGTCATTCAGAATACTGGCTCTGGGCCGTACTTGTGGCAGTGATTGTCAACGTCCTGATGACGACCGTT
TTGATGACGCTAGCCTTTCCAAAACAGTCCTTGATTCAGGGGCTGATAGATAAACTGAACAGTATCACTCGTGAGAGTTT
AACAGGTATTCGTGTCGTTCGTGCCTACAATGCAGAGGATTATCAAAATGAAAAATTTGCAGCAGTAAATGATGAATTGA
CCCGTTTGAATTTGTTTGTCAACCGTCTTATGGCTATTTTGAATCCTATCATGATGGGGATTTCAAGTGGTTTGAGTGTA
GCGATTTACTGGATTGGGGCCTATGTGATTAACGACGCTGCTCCGATAGCGCGTCTGCCTCTCTTTAGTGACATGATTGT
TTTCATGTCTTATGCCATGTAG

Domains

Predicted by InterproScan.

ABC transporter transmembrane region (ABC_membrane)

(3-272)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrP Streptococcus mutans UA159

56.491

100

0.59

Multiple sequence alignment