Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrQ   Type   Regulator
Locus tag   E0F40_RS12215 Genome accession   NZ_LR216065
Coordinates   1756032..1757063 (-) Length   343 a.a.
NCBI ID   WP_000506416.1    Uniprot ID   -
Organism   Streptococcus pneumoniae strain GPSC18 substr. ST13 isolate 55896440-41bd-11e5-998e-3c4a9275d6c6     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 1751032..1762063
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  E0F40_RS09370 (SAMEA3714487_01777) - 1751126..1751887 (-) 762 WP_001107758.1 SDR family NAD(P)-dependent oxidoreductase -
  E0F40_RS09375 (SAMEA3714487_01778) ytpR 1751920..1752546 (-) 627 WP_000578309.1 YtpR family tRNA-binding protein -
  E0F40_RS09380 (SAMEA3714487_01779) - 1752562..1752879 (-) 318 WP_000615767.1 thioredoxin family protein -
  E0F40_RS09385 (SAMEA3714487_01780) - 1752876..1753175 (-) 300 WP_001013974.1 DUF4651 domain-containing protein -
  E0F40_RS12360 - 1753269..1753400 (+) 132 WP_001811306.1 hypothetical protein -
  E0F40_RS12210 - 1753425..1753505 (-) 81 WP_223200442.1 hypothetical protein -
  E0F40_RS09390 - 1753512..1753703 (-) 192 WP_000291826.1 cell wall-binding protein -
  E0F40_RS09395 (SAMEA3714487_01781) - 1753864..1754538 (-) 675 WP_000725742.1 LiaF transmembrane domain-containing protein -
  E0F40_RS09400 (SAMEA3714487_01782) - 1754544..1754990 (-) 447 WP_000776587.1 LytTR family DNA-binding domain-containing protein -
  E0F40_RS09405 (SAMEA3714487_01783) - 1755104..1755607 (-) 504 WP_000800947.1 phosphatase PAP2 family protein -
  E0F40_RS09410 (SAMEA3714487_01784) - 1755604..1755966 (-) 363 WP_000078805.1 DUF2200 domain-containing protein -
  E0F40_RS12215 (SAMEA3714487_01785) rcrQ 1756032..1757063 (-) 1032 WP_000506416.1 ABC transporter ATP-binding protein Regulator
  E0F40_RS12220 (SAMEA3714487_01786) rcrP 1757070..1757891 (-) 822 WP_000601687.1 ABC transporter permease Regulator
  E0F40_RS09420 (SAMEA3714487_01787) - 1757908..1758377 (-) 470 Protein_1760 MarR family winged helix-turn-helix transcriptional regulator -
  E0F40_RS09430 (SAMEA3714487_01788) - 1758501..1759217 (-) 717 WP_000532876.1 YebC/PmpR family DNA-binding transcriptional regulator -
  E0F40_RS09440 (SAMEA3714487_01789) ply 1760098..1761513 (-) 1416 WP_001284361.1 cholesterol-dependent cytolysin pneumolysin -
  E0F40_RS09445 (SAMEA3714487_01790) - 1761524..1761934 (-) 411 WP_000595758.1 hypothetical protein -

Sequence

Protein


Download         Length: 343 a.a.        Molecular weight: 37907.14 Da        Isoelectric Point: 4.4769

>NTDB_id=1126390 E0F40_RS12215 WP_000506416.1 1756032..1757063(-) (rcrQ) [Streptococcus pneumoniae strain GPSC18 substr. ST13 isolate 55896440-41bd-11e5-998e-3c4a9275d6c6]
MGFLLMGALFIVLPRTMVSAKRINQVLDLHSSIQNPVQVQLTDENFKGQVEFKDVTFRYAANSEAVIEHVSFKAETGQTV
AFIGSTGSGKSTLVNLIPRFYDVSAGEILVDGVNVQDYDFSATAHAGQKVAIVGPTGAGKTTIVNLLMKFYEIDKGSIRI
DGVDTKAMTRSEVHDAFSMVLQDTWLFEGTIRDNLIYNQIGISDERMMEASKAVGIHHFIMTLPDGYDTILDDTVTLSVG
QKQLLTIARALLKDAPLLILDEATSSVDTRTEELIQKAMDRLMEGRTSFVIAHRLSTIRNADLILVMKDGNIIEQGNYEE
LMAQGGFYADLYNSQFTEDEAEE

Nucleotide


Download         Length: 1032 bp        

>NTDB_id=1126390 E0F40_RS12215 WP_000506416.1 1756032..1757063(-) (rcrQ) [Streptococcus pneumoniae strain GPSC18 substr. ST13 isolate 55896440-41bd-11e5-998e-3c4a9275d6c6]
ATGGGCTTCCTTCTCATGGGAGCACTCTTCATCGTTCTTCCCCGAACTATGGTCTCTGCTAAGCGGATTAATCAAGTTTT
AGATTTGCATTCTTCTATCCAAAACCCTGTTCAAGTGCAGCTGACTGATGAAAACTTCAAAGGTCAGGTCGAGTTTAAGG
ATGTGACCTTCCGCTATGCGGCAAATTCGGAGGCAGTTATTGAACATGTTAGCTTTAAAGCAGAAACTGGTCAAACAGTG
GCCTTTATTGGGTCAACAGGTTCTGGTAAATCAACTCTGGTCAATCTGATTCCACGTTTCTACGACGTGTCAGCAGGAGA
AATTCTGGTGGACGGTGTCAATGTTCAAGACTATGACTTCTCTGCGACAGCTCATGCTGGTCAAAAGGTTGCCATTGTTG
GGCCGACTGGGGCTGGTAAGACAACCATTGTCAATCTTTTGATGAAATTCTATGAGATTGATAAGGGAAGTATTCGCATT
GATGGTGTGGATACCAAGGCTATGACGCGTTCAGAAGTGCATGATGCCTTTTCAATGGTCTTGCAGGATACCTGGCTCTT
TGAAGGAACTATTCGAGACAATCTCATCTATAATCAAATAGGGATTAGTGATGAACGAATGATGGAAGCTAGTAAGGCTG
TGGGAATTCACCACTTTATTATGACCTTGCCAGATGGCTATGATACCATCTTGGATGACACCGTGACCTTGTCTGTAGGA
CAAAAACAACTATTGACTATTGCTCGTGCCCTTCTTAAGGATGCACCGCTTTTGATTTTGGATGAGGCGACTTCTTCTGT
TGACACACGGACAGAGGAATTGATCCAAAAAGCCATGGACCGTTTGATGGAAGGACGCACATCCTTTGTCATTGCCCACC
GCTTGTCAACCATCCGAAATGCAGACTTGATCTTGGTCATGAAAGATGGAAATATCATCGAGCAAGGCAACTATGAGGAA
CTGATGGCGCAAGGTGGCTTCTACGCTGACTTGTACAATAGTCAATTTACAGAAGATGAAGCAGAAGAATAA

Domains

Predicted by InterproScan.

ABC transporter (ABC_tran)

(120-265)

ABC transporter (ABC_tran)

(68-118)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrQ Streptococcus mutans UA159

81.25

65.306

0.531
  rcrP Streptococcus mutans UA159

37.861

100

0.382

Multiple sequence alignment