Detailed information    

insolico Bioinformatically predicted

Overview

Name   HI0659   Type   Machinery gene
Locus tag   E0F40_RS02745 Genome accession   NZ_LR216065
Coordinates   497967..498233 (+) Length   88 a.a.
NCBI ID   WP_001811621.1    Uniprot ID   A0AAP5J8I9
Organism   Streptococcus pneumoniae strain GPSC18 substr. ST13 isolate 55896440-41bd-11e5-998e-3c4a9275d6c6     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 492967..503233
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  E0F40_RS02725 (SAMEA3714487_00502) - 493178..493687 (+) 510 WP_000619950.1 GNAT family N-acetyltransferase -
  E0F40_RS02730 (SAMEA3714487_00503) pheT 493764..496169 (+) 2406 WP_000961567.1 phenylalanine--tRNA ligase subunit beta -
  E0F40_RS02735 (SAMEA3714487_00504) - 496237..497238 (-) 1002 WP_000597968.1 endonuclease/exonuclease/phosphatase family protein -
  E0F40_RS02740 (SAMEA3714487_00505) - 497394..497882 (+) 489 Protein_514 transposase -
  E0F40_RS02745 (SAMEA3714487_00506) HI0659 497967..498233 (+) 267 WP_001811621.1 helix-turn-helix domain-containing protein Machinery gene
  E0F40_RS02750 (SAMEA3714487_00507) metE 498494..500743 (+) 2250 WP_000108198.1 5-methyltetrahydropteroyltriglutamate-- homocysteine S-methyltransferase -
  E0F40_RS02755 (SAMEA3714487_00508) metF 500807..501673 (+) 867 WP_000089990.1 methylenetetrahydrofolate reductase [NAD(P)H] -

Sequence

Protein


Download         Length: 88 a.a.        Molecular weight: 9560.13 Da        Isoelectric Point: 4.8274

>NTDB_id=1126329 E0F40_RS02745 WP_001811621.1 497967..498233(+) (HI0659) [Streptococcus pneumoniae strain GPSC18 substr. ST13 isolate 55896440-41bd-11e5-998e-3c4a9275d6c6]
MEGCLSELFSKEEILESDMRVAIMSELIEARNKQGISQKKLEEVSGVSQPVIARMETGKTSPQLDTVLKVLASLGKTLAV
VPLEQGKS

Nucleotide


Download         Length: 267 bp        

>NTDB_id=1126329 E0F40_RS02745 WP_001811621.1 497967..498233(+) (HI0659) [Streptococcus pneumoniae strain GPSC18 substr. ST13 isolate 55896440-41bd-11e5-998e-3c4a9275d6c6]
TTGGAAGGATGTCTATCTGAGCTCTTTAGCAAGGAGGAAATCCTTGAAAGTGATATGCGAGTAGCTATCATGAGCGAGTT
GATTGAAGCCAGAAATAAGCAAGGAATCAGTCAGAAAAAGCTAGAGGAAGTCAGTGGAGTGAGTCAGCCTGTTATAGCTA
GGATGGAGACAGGTAAGACTAGTCCACAGTTGGACACAGTCTTAAAAGTCCTAGCTAGTCTAGGAAAGACACTAGCAGTC
GTTCCACTTGAACAGGGGAAAAGTTGA

Domains

Predicted by InterProScan.

Helix-turn-helix (HTH_3)

(28-79)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  HI0659 Haemophilus influenzae Rd KW20

61.039

87.5

0.534

Multiple sequence alignment