Detailed information
Bioinformatically predicted
Overview
| Name | recA | Type | Machinery gene |
| Locus tag | OU5_RS11255 | Genome accession | NZ_CP005960 |
| Coordinates | 2518740..2519792 (-) | Length | 350 a.a. |
| NCBI ID | WP_007907270.1 | Uniprot ID | - |
| Organism | Pseudomonas mandelii JR-1 | ||
| Function | homologous recombination (predicted from homology) Homologous recombination |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| Prophage | 2518264..2550097 | 2518740..2519792 | within | 0 |
Gene organization within MGE regions
Location: 2518264..2550097
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| OU5_RS11250 (OU5_2238) | recX | 2518264..2518731 (-) | 468 | WP_010462714.1 | recombination regulator RecX | - |
| OU5_RS11255 (OU5_2239) | recA | 2518740..2519792 (-) | 1053 | WP_007907270.1 | recombinase RecA | Machinery gene |
| OU5_RS11260 (OU5_2240) | - | 2519876..2520376 (-) | 501 | WP_010462721.1 | CinA family protein | - |
| OU5_RS11265 (OU5_2241) | - | 2520457..2520993 (-) | 537 | WP_010462723.1 | lysis system i-spanin subunit Rz | - |
| OU5_RS11270 (OU5_2242) | - | 2520975..2521538 (-) | 564 | WP_042932331.1 | glycoside hydrolase family 19 protein | - |
| OU5_RS11275 (OU5_2243) | - | 2521542..2521946 (-) | 405 | WP_010462727.1 | phage tail assembly chaperone | - |
| OU5_RS11280 (OU5_2244) | - | 2521958..2523169 (-) | 1212 | WP_010462729.1 | hypothetical protein | - |
| OU5_RS11285 (OU5_2245) | - | 2523209..2523769 (-) | 561 | WP_010462731.1 | tail fiber assembly protein | - |
| OU5_RS11290 (OU5_2246) | - | 2523777..2524871 (-) | 1095 | WP_010462733.1 | hypothetical protein | - |
| OU5_RS11295 (OU5_2247) | - | 2524997..2525512 (-) | 516 | WP_042932334.1 | hypothetical protein | - |
| OU5_RS11300 (OU5_2248) | - | 2525509..2526660 (-) | 1152 | WP_010462737.1 | hypothetical protein | - |
| OU5_RS11305 (OU5_2249) | - | 2526672..2527271 (-) | 600 | WP_010462739.1 | YmfQ family protein | - |
| OU5_RS11310 (OU5_2250) | - | 2527262..2528302 (-) | 1041 | WP_010462741.1 | baseplate J/gp47 family protein | - |
| OU5_RS11315 (OU5_2251) | - | 2528292..2528690 (-) | 399 | WP_010462743.1 | phage GP46 family protein | - |
| OU5_RS11320 (OU5_2252) | - | 2528690..2529199 (-) | 510 | WP_010462745.1 | phage baseplate assembly protein V | - |
| OU5_RS11325 (OU5_2253) | - | 2529274..2530317 (-) | 1044 | WP_010462746.1 | phage baseplate assembly protein | - |
| OU5_RS11330 (OU5_2254) | - | 2530320..2531555 (-) | 1236 | WP_010462749.1 | DNA circularization protein | - |
| OU5_RS11335 (OU5_2255) | - | 2531542..2533419 (-) | 1878 | WP_010462750.1 | hypothetical protein | - |
| OU5_RS11340 (OU5_2256) | - | 2533550..2533846 (-) | 297 | WP_010462752.1 | phage tail assembly protein | - |
| OU5_RS11345 (OU5_2257) | - | 2533843..2534190 (-) | 348 | WP_010462754.1 | phage tail tube protein | - |
| OU5_RS11350 (OU5_2258) | - | 2534271..2535767 (-) | 1497 | WP_010462756.1 | phage tail sheath subtilisin-like domain-containing protein | - |
| OU5_RS11355 (OU5_2259) | - | 2535767..2535949 (-) | 183 | WP_010462758.1 | DUF2635 domain-containing protein | - |
| OU5_RS11360 (OU5_2260) | - | 2535946..2536530 (-) | 585 | WP_010462760.1 | phage tail terminator protein | - |
| OU5_RS11365 (OU5_2261) | - | 2536662..2537009 (-) | 348 | WP_010462762.1 | phage holin family protein | - |
| OU5_RS11370 (OU5_2262) | - | 2537506..2538240 (-) | 735 | WP_042932336.1 | LexA family transcriptional regulator | - |
| OU5_RS11375 (OU5_2264) | mutS | 2538452..2541019 (+) | 2568 | WP_191650639.1 | DNA mismatch repair protein MutS | - |
| OU5_RS11380 (OU5_2265) | fdxA | 2541162..2541485 (+) | 324 | WP_008154011.1 | ferredoxin FdxA | - |
| OU5_RS11385 (OU5_2266) | rpoS | 2541959..2542966 (-) | 1008 | WP_010462770.1 | RNA polymerase sigma factor RpoS | - |
| OU5_RS33275 | - | 2543072..2543929 (-) | 858 | WP_010462772.1 | peptidoglycan DD-metalloendopeptidase family protein | - |
| OU5_RS11395 (OU5_2268) | - | 2544141..2544776 (-) | 636 | WP_010462773.1 | protein-L-isoaspartate(D-aspartate) O-methyltransferase | - |
| OU5_RS11400 (OU5_2269) | surE | 2544818..2545567 (-) | 750 | WP_010462776.1 | 5'/3'-nucleotidase SurE | - |
| OU5_RS11405 (OU5_2270) | truD | 2545555..2546613 (-) | 1059 | WP_010462778.1 | tRNA pseudouridine(13) synthase TruD | - |
| OU5_RS11410 (OU5_2271) | ispF | 2546610..2547083 (-) | 474 | WP_010462780.1 | 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase | - |
| OU5_RS11415 (OU5_2272) | fghA | 2547127..2547972 (-) | 846 | WP_010462782.1 | S-formylglutathione hydrolase | - |
| OU5_RS11420 (OU5_2273) | - | 2547981..2549093 (-) | 1113 | WP_010462785.1 | S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase | - |
| OU5_RS11425 (OU5_2274) | - | 2549201..2550097 (+) | 897 | WP_010462786.1 | LysR substrate-binding domain-containing protein | - |
Sequence
Protein
Download Length: 350 a.a. Molecular weight: 37269.83 Da Isoelectric Point: 5.5328
>NTDB_id=112631 OU5_RS11255 WP_007907270.1 2518740..2519792(-) (recA) [Pseudomonas mandelii JR-1]
MDDNKKKALAAALGQIERQFGKGAVMRMGDQDRQAIPAISTGSLGLDIALGIGGLPKGRIVEIYGPESSGKTTLTLSVIA
QAQKAGATCAFVDAEHALDPEYAGKLGVNVDDLLVSQPDTGEQALEITDMLVRSNAVDVIIVDSVAALVPKAEIEGEMGD
MHVGLQARLMSQALRKITGNIKNANCLVIFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRTGAVKEGDEVVGSE
TRVKVVKNKVASPFRQAEFQILYGKGIYLNGEMIDLGVLHGFVEKSGAWYAYEGTKIGQGKANSAKFLADNPEIAAKLEK
QLRDKLLTPAPDVKASPVKETADDLADADI
MDDNKKKALAAALGQIERQFGKGAVMRMGDQDRQAIPAISTGSLGLDIALGIGGLPKGRIVEIYGPESSGKTTLTLSVIA
QAQKAGATCAFVDAEHALDPEYAGKLGVNVDDLLVSQPDTGEQALEITDMLVRSNAVDVIIVDSVAALVPKAEIEGEMGD
MHVGLQARLMSQALRKITGNIKNANCLVIFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRTGAVKEGDEVVGSE
TRVKVVKNKVASPFRQAEFQILYGKGIYLNGEMIDLGVLHGFVEKSGAWYAYEGTKIGQGKANSAKFLADNPEIAAKLEK
QLRDKLLTPAPDVKASPVKETADDLADADI
Nucleotide
Download Length: 1053 bp
>NTDB_id=112631 OU5_RS11255 WP_007907270.1 2518740..2519792(-) (recA) [Pseudomonas mandelii JR-1]
ATGGACGACAACAAGAAGAAAGCCTTGGCTGCGGCCCTGGGTCAGATCGAACGTCAATTCGGCAAGGGTGCCGTAATGCG
TATGGGCGATCAGGACCGTCAGGCGATCCCGGCTATCTCCACTGGCTCTCTGGGTCTGGACATCGCGCTCGGCATTGGCG
GTCTGCCAAAAGGTCGTATCGTTGAAATCTACGGTCCTGAATCCTCCGGTAAAACCACGCTGACGCTGTCGGTGATCGCC
CAGGCTCAAAAAGCGGGCGCGACCTGCGCATTCGTCGACGCCGAACACGCCCTCGACCCTGAGTACGCCGGCAAACTGGG
CGTCAACGTCGACGACCTGCTGGTTTCCCAACCGGACACCGGCGAGCAAGCCCTGGAAATCACCGACATGCTGGTGCGTT
CCAACGCAGTTGACGTGATCATCGTCGACTCCGTGGCCGCGCTGGTTCCGAAGGCTGAAATCGAAGGCGAAATGGGTGAC
ATGCACGTCGGCCTGCAAGCCCGTCTGATGTCCCAGGCGCTGCGTAAAATCACCGGTAACATCAAGAACGCCAACTGCCT
GGTAATTTTCATCAACCAGATCCGTATGAAAATCGGCGTGATGTTCGGCAGCCCGGAAACCACCACCGGTGGTAACGCGT
TGAAGTTCTACGCCTCGGTTCGTCTGGACATCCGTCGTACTGGCGCGGTGAAAGAAGGTGATGAAGTCGTCGGTAGCGAA
ACCCGCGTCAAAGTCGTCAAGAACAAGGTGGCTTCTCCGTTCCGTCAGGCCGAGTTCCAGATTCTTTACGGCAAGGGCAT
CTACCTCAACGGCGAGATGATCGACCTGGGCGTGCTGCACGGTTTCGTTGAGAAGTCCGGCGCCTGGTATGCCTATGAAG
GCACCAAGATCGGTCAGGGCAAGGCCAACTCGGCCAAGTTCCTGGCAGACAATCCGGAAATTGCCGCCAAGCTCGAGAAG
CAACTGCGTGACAAGTTGCTGACCCCGGCGCCGGACGTCAAAGCATCGCCAGTCAAAGAGACGGCTGATGACCTGGCTGA
CGCTGATATCTGA
ATGGACGACAACAAGAAGAAAGCCTTGGCTGCGGCCCTGGGTCAGATCGAACGTCAATTCGGCAAGGGTGCCGTAATGCG
TATGGGCGATCAGGACCGTCAGGCGATCCCGGCTATCTCCACTGGCTCTCTGGGTCTGGACATCGCGCTCGGCATTGGCG
GTCTGCCAAAAGGTCGTATCGTTGAAATCTACGGTCCTGAATCCTCCGGTAAAACCACGCTGACGCTGTCGGTGATCGCC
CAGGCTCAAAAAGCGGGCGCGACCTGCGCATTCGTCGACGCCGAACACGCCCTCGACCCTGAGTACGCCGGCAAACTGGG
CGTCAACGTCGACGACCTGCTGGTTTCCCAACCGGACACCGGCGAGCAAGCCCTGGAAATCACCGACATGCTGGTGCGTT
CCAACGCAGTTGACGTGATCATCGTCGACTCCGTGGCCGCGCTGGTTCCGAAGGCTGAAATCGAAGGCGAAATGGGTGAC
ATGCACGTCGGCCTGCAAGCCCGTCTGATGTCCCAGGCGCTGCGTAAAATCACCGGTAACATCAAGAACGCCAACTGCCT
GGTAATTTTCATCAACCAGATCCGTATGAAAATCGGCGTGATGTTCGGCAGCCCGGAAACCACCACCGGTGGTAACGCGT
TGAAGTTCTACGCCTCGGTTCGTCTGGACATCCGTCGTACTGGCGCGGTGAAAGAAGGTGATGAAGTCGTCGGTAGCGAA
ACCCGCGTCAAAGTCGTCAAGAACAAGGTGGCTTCTCCGTTCCGTCAGGCCGAGTTCCAGATTCTTTACGGCAAGGGCAT
CTACCTCAACGGCGAGATGATCGACCTGGGCGTGCTGCACGGTTTCGTTGAGAAGTCCGGCGCCTGGTATGCCTATGAAG
GCACCAAGATCGGTCAGGGCAAGGCCAACTCGGCCAAGTTCCTGGCAGACAATCCGGAAATTGCCGCCAAGCTCGAGAAG
CAACTGCGTGACAAGTTGCTGACCCCGGCGCCGGACGTCAAAGCATCGCCAGTCAAAGAGACGGCTGATGACCTGGCTGA
CGCTGATATCTGA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.