Detailed information    

insolico Bioinformatically predicted

Overview

Name   treR   Type   Regulator
Locus tag   E0F39_RS09755 Genome accession   NZ_LR216060
Coordinates   1810206..1810916 (+) Length   236 a.a.
NCBI ID   WP_001865045.1    Uniprot ID   A0A0T8GPJ5
Organism   Streptococcus pneumoniae strain GPSC47 substr. ST315     
Function   regulate expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 1805206..1815916
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  E0F39_RS09735 (SAMEA3713867_01840) - 1805747..1805995 (-) 249 WP_000364990.1 YneF family protein -
  E0F39_RS09740 (SAMEA3713867_01841) treC 1806251..1807876 (-) 1626 WP_000171222.1 alpha,alpha-phosphotrehalase -
  E0F39_RS09750 (SAMEA3713867_01842) treP 1808054..1810021 (-) 1968 WP_001865046.1 PTS system trehalose-specific EIIBC component -
  E0F39_RS09755 (SAMEA3713867_01843) treR 1810206..1810916 (+) 711 WP_001865045.1 trehalose operon repressor Regulator
  E0F39_RS09765 - 1811071..1812377 (+) 1307 Protein_1866 transposase -
  E0F39_RS09770 (SAMEA3713867_01846) amiF 1812452..1813378 (-) 927 WP_001291293.1 ATP-binding cassette domain-containing protein Regulator
  E0F39_RS09775 (SAMEA3713867_01847) amiE 1813389..1814456 (-) 1068 WP_000159554.1 ABC transporter ATP-binding protein Regulator
  E0F39_RS09780 (SAMEA3713867_01848) amiD 1814465..1815391 (-) 927 WP_000103697.1 oligopeptide ABC transporter permease OppC Regulator

Sequence

Protein


Download         Length: 236 a.a.        Molecular weight: 27665.81 Da        Isoelectric Point: 8.2477

>NTDB_id=1126200 E0F39_RS09755 WP_001865045.1 1810206..1810916(+) (treR) [Streptococcus pneumoniae strain GPSC47 substr. ST315]
MKKYQQLFKQIQETIQNETYAVGDFLPSEHDLMEQYQVSRDTVRKALSLLQEEGLIKKIRGQGSQVVKEETVNFPVSNLT
SYQELVKELGLRSKTNVVSLDKIIIDKKSSLITGFPEFRMVWKVVRQRVVDDLVSVLDTDYLDMELIPNLTRQIAEQSIY
SYIENDLKLLIDYAQKEITIDHSSDRDKILMDIGKDPYVVSIKSKVYLQDGRQFQFTESRHKLEKFRFVDFAKRKK

Nucleotide


Download         Length: 711 bp        

>NTDB_id=1126200 E0F39_RS09755 WP_001865045.1 1810206..1810916(+) (treR) [Streptococcus pneumoniae strain GPSC47 substr. ST315]
ATGAAGAAATACCAACAATTATTTAAGCAAATCCAAGAAACCATTCAAAACGAGACTTACGCTGTCGGAGATTTCCTTCC
TAGCGAGCACGACCTTATGGAGCAATATCAAGTGAGTCGTGATACCGTCCGAAAGGCCCTGTCTCTCCTCCAAGAGGAAG
GATTGATCAAAAAGATAAGAGGGCAAGGTTCTCAAGTCGTCAAAGAAGAAACCGTCAATTTCCCTGTATCCAACCTAACC
AGCTACCAAGAACTAGTTAAAGAACTTGGACTGCGCTCTAAAACCAACGTGGTCAGTCTGGACAAGATTATTATTGATAA
AAAATCCTCACTGATAACCGGTTTCCCAGAGTTTCGGATGGTTTGGAAGGTGGTCCGCCAGCGTGTGGTGGATGATCTGG
TATCCGTTCTGGATACAGACTATCTGGATATGGAACTAATTCCAAATCTCACTCGCCAAATTGCTGAGCAGTCTATCTAT
TCTTATATAGAAAATGACCTCAAACTCCTTATTGATTATGCTCAGAAGGAAATCACCATTGACCACTCAAGCGACCGAGA
CAAGATTCTCATGGACATTGGCAAAGACCCTTATGTCGTTTCGATTAAATCAAAAGTCTATCTCCAAGACGGACGCCAAT
TTCAGTTTACCGAAAGTCGCCATAAGTTAGAAAAATTTAGATTTGTAGATTTTGCAAAACGCAAGAAATAA

Domains

Predicted by InterProScan.

Bacterial regulatory proteins, gntR family (GntR)

(3-66)

UTRA domain (UTRA)

(89-227)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  treR Streptococcus mutans UA159

59.322

100

0.593

Multiple sequence alignment