Detailed information NTG1126077

Bioinformatically predicted

Overview

• Name: scnR
• Type: Regulator
• Locus tag: E4L76_RS06970
• Genome accession: NZ_LR215983
• Coordinates: 1451133..1451828 (+)
• Length: 231 a.a.
• NCBI ID: WP_133965581.1
• Uniprot ID: -
• Organism: Eubacterium limosum isolate Eubacterium limosum 81C1
• Function: regulate comX expression (predicted from homology) Competence regulation

Genomic Context

Location: 1446133..1456828

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
E4L76_RS06950	-	1446716..1448200 (+)	1485	WP_133965575.1	glycerol kinase	-
E4L76_RS06955	-	1448576..1449310 (-)	735	WP_133965577.1	ABC transporter permease	-
E4L76_RS06960	-	1449323..1450072 (-)	750	WP_133965579.1	ABC transporter permease	-
E4L76_RS06965	-	1450072..1450980 (-)	909	WP_038351563.1	ABC transporter ATP-binding protein	-
E4L76_RS06970	scnR	1451133..1451828 (+)	696	WP_133965581.1	response regulator transcription factor	Regulator
E4L76_RS06975	-	1451841..1453280 (+)	1440	WP_133965583.1	HAMP domain-containing sensor histidine kinase	-
E4L76_RS06980	-	1453336..1453734 (-)	399	WP_133965585.1	secondary thiamine-phosphate synthase enzyme YjbQ	-
E4L76_RS06990	-	1454101..1455150 (+)	1050	WP_133965587.1	response regulator	-
E4L76_RS06995	-	1455368..1456786 (+)	1419	WP_133965589.1	C69 family dipeptidase	-

Sequence

Protein

• Length: 231 a.a.
• Molecular weight: 25704.92 Da
• Isoelectric Point: 4.9135

>NTDB_id=1126077 E4L76_RS06970 WP_133965581.1 1451133..1451828(+) (scnR) [Eubacterium limosum isolate Eubacterium limosum 81C1]
MDYIKDKGILLVDDEPELLKLVLKILKNEGFVKVYTASSVAEGMTVFLEKAPDMAVLDVMLPDGEGFELLKFIRASSDIP
VLFLSARGNAEDRFTGFGLGADDYIIKPFLPQELVFRINAILKRAYKNEAPTFTLADATVDLDRAEIIRGEELLPLTAKE
HAILQKLYENAGKIVTIGALCDFVWEGDSYGYEKPLMAHIGRIREKIEADPSHPKSLTTVKGLGYKLLVNK

Nucleotide

• Length: 696 bp

>NTDB_id=1126077 E4L76_RS06970 WP_133965581.1 1451133..1451828(+) (scnR) [Eubacterium limosum isolate Eubacterium limosum 81C1]
ATGGATTACATCAAAGATAAAGGCATTCTTCTGGTTGACGATGAACCAGAGCTTTTAAAGCTGGTGCTTAAGATACTCAA
AAATGAAGGCTTTGTGAAGGTTTATACAGCGTCGAGCGTGGCCGAGGGAATGACCGTTTTCCTGGAAAAAGCTCCTGATA
TGGCCGTGCTTGATGTGATGCTGCCAGATGGTGAGGGTTTTGAGCTGCTCAAATTCATCCGTGCCTCTTCGGATATCCCT
GTGCTTTTTCTATCAGCCAGAGGCAATGCCGAGGACCGGTTCACCGGCTTTGGTCTGGGTGCGGATGATTATATTATCAA
GCCCTTTTTGCCGCAGGAGCTTGTGTTTAGGATCAATGCTATTTTAAAACGTGCCTATAAAAATGAAGCGCCGACCTTTA
CTCTGGCTGATGCCACAGTAGATCTGGACCGCGCTGAGATTATCAGGGGAGAGGAGCTTCTGCCCCTTACGGCCAAAGAG
CACGCCATTCTTCAAAAGCTCTATGAGAACGCAGGGAAAATCGTAACCATCGGCGCCCTCTGCGATTTTGTATGGGAGGG
TGACAGCTATGGCTATGAAAAACCGCTCATGGCTCATATCGGGCGTATCCGGGAAAAAATCGAGGCTGACCCCAGCCATC
CAAAGTCTCTTACTACGGTCAAGGGGCTGGGCTATAAATTGTTAGTAAATAAATAG

Domains

Predicted by InterproScan.

• Transcriptional regulatory protein, C terminal (Trans_reg_C) (154-227)

• Response regulator receiver domain (Response_reg) (9-118)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
scnR	Streptococcus mutans UA159	50	99.567	0.498