Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrQ   Type   Regulator
Locus tag   E4L76_RS03050 Genome accession   NZ_LR215983
Coordinates   660764..662653 (+) Length   629 a.a.
NCBI ID   WP_133964855.1    Uniprot ID   -
Organism   Eubacterium limosum isolate Eubacterium limosum 81C1     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 655764..667653
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  E4L76_RS03030 - 656105..656902 (+) 798 WP_133964851.1 Cof-type HAD-IIB family hydrolase -
  E4L76_RS03035 - 657096..658136 (-) 1041 WP_133964852.1 HAMP domain-containing sensor histidine kinase -
  E4L76_RS03040 - 658133..658807 (-) 675 WP_133964853.1 response regulator transcription factor -
  E4L76_RS03045 rcrP 659008..660771 (+) 1764 WP_133964854.1 ABC transporter ATP-binding protein Regulator
  E4L76_RS03050 rcrQ 660764..662653 (+) 1890 WP_133964855.1 ABC transporter ATP-binding protein Regulator
  E4L76_RS03055 - 662978..664210 (+) 1233 WP_133964856.1 aminopeptidase P N-terminal domain-containing protein -
  E4L76_RS03060 metK 664760..665941 (+) 1182 WP_133964857.1 methionine adenosyltransferase -
  E4L76_RS03065 ftsE 666192..666881 (+) 690 WP_038350654.1 cell division ATP-binding protein FtsE -

Sequence

Protein


Download         Length: 629 a.a.        Molecular weight: 68634.10 Da        Isoelectric Point: 5.8878

>NTDB_id=1126074 E4L76_RS03050 WP_133964855.1 660764..662653(+) (rcrQ) [Eubacterium limosum isolate Eubacterium limosum 81C1]
MPENEYTIGEHKNQTPKHSGLSGPGSSGGPGGPGGIGSVGAAEKADDFGKAIGQLLSYCKKYLPFMIVAIVLAAAGAILN
IIGPSKLADITDLITEGLMTGIDIEAVVRICILLIGLYICGWAFSLIQGQIMAVITQRVSKTLRTDISAKINRLPLKYYD
STSIGNTLSRVTNDIDTISQTMNQSLGTLVAALASFVGAIVMMFYTNWIMAFTAIIASLLGFALMMMMISHSQKFFLRQQ
TELGAINGHIEETYAGHNVVKAYNNEKKAKQEFCQMNSRLYDSAWKSQFMSGLMQPLMSFVGNFGYVTVCIVGAVLALNG
QISFGVIVAFMMYVRMFTQPLSQLAQAATSLQSTAAACERVFVFLDEKEMDDESYKAKELSNVRGDVEFRDVRFGYNEDK
TIINGFSAKAKAGQKIAIVGPTGAGKTTMVNLLMRFYETNSGDIFIDGTSSKDVTRENLRSQFCMVLQDTWLFEGTIREN
IVYSKEDVSDAEVEKACKAVGLHHYIKTLPKGYDTVLGDNASLSQGQKQLITIARAMIANAPILILDEATSSVDTRTETL
IQNAMDKLMAGRTSFVIAHRLSTIRNSDLILVMKDGDIIESGNHDTLMAQGGFYTELYNSQFVDIVESA

Nucleotide


Download         Length: 1890 bp        

>NTDB_id=1126074 E4L76_RS03050 WP_133964855.1 660764..662653(+) (rcrQ) [Eubacterium limosum isolate Eubacterium limosum 81C1]
ATGCCTGAAAATGAATATACGATAGGAGAACATAAAAATCAAACTCCGAAGCACAGTGGTCTCAGTGGTCCAGGCAGTTC
TGGTGGCCCTGGCGGTCCGGGAGGAATAGGTAGTGTGGGAGCCGCTGAAAAAGCCGACGACTTTGGAAAAGCAATCGGTC
AGCTTCTTTCTTATTGTAAGAAGTATTTGCCTTTTATGATCGTTGCCATTGTACTGGCTGCTGCAGGTGCAATTTTGAAC
ATCATCGGTCCCAGCAAGCTTGCAGATATTACAGACTTGATTACCGAAGGCTTAATGACTGGCATTGATATAGAAGCTGT
TGTCCGTATTTGTATTCTGCTGATTGGCCTCTATATCTGCGGTTGGGCATTCAGTCTGATCCAGGGACAAATTATGGCGG
TGATTACGCAGCGAGTATCCAAAACCTTGCGTACGGATATTTCTGCTAAGATTAACCGCTTGCCACTGAAATACTATGAT
TCTACCAGTATCGGCAATACCTTGTCCCGTGTTACCAACGATATAGACACTATATCTCAGACTATGAATCAGAGTTTAGG
TACTCTGGTGGCAGCATTGGCCTCTTTTGTGGGCGCCATCGTGATGATGTTTTATACCAACTGGATAATGGCGTTTACTG
CGATTATTGCAAGTTTATTGGGATTTGCATTGATGATGATGATGATCTCCCATTCACAAAAATTCTTTTTACGGCAGCAA
ACGGAACTTGGTGCCATCAACGGACACATTGAAGAAACCTATGCTGGCCACAATGTGGTAAAAGCCTATAACAATGAGAA
AAAGGCAAAACAAGAATTCTGTCAAATGAACAGCCGCCTATATGACAGTGCTTGGAAAAGCCAGTTTATGTCTGGACTTA
TGCAGCCGCTGATGAGCTTTGTTGGTAACTTCGGTTATGTAACGGTCTGTATTGTGGGCGCAGTGCTTGCCCTGAATGGA
CAGATCTCTTTTGGTGTTATTGTTGCTTTTATGATGTATGTGCGTATGTTCACTCAACCGCTGTCTCAGCTCGCTCAGGC
GGCTACCAGCCTTCAGTCCACCGCCGCTGCCTGTGAACGTGTATTTGTGTTTTTGGATGAAAAAGAAATGGACGATGAAA
GTTACAAAGCAAAAGAACTTTCAAATGTTCGCGGTGATGTAGAATTTCGAGATGTCCGTTTCGGTTACAATGAGGATAAG
ACGATCATTAACGGTTTTTCAGCCAAAGCAAAAGCTGGCCAAAAAATCGCCATTGTCGGCCCTACCGGCGCAGGAAAGAC
TACAATGGTTAATCTGCTGATGCGGTTTTATGAAACTAATTCCGGTGATATTTTCATTGACGGAACTTCCAGCAAAGATG
TGACCAGAGAAAACCTGCGCAGCCAATTCTGTATGGTATTGCAGGATACATGGCTTTTTGAAGGTACCATCCGTGAAAAT
ATTGTTTACTCCAAGGAAGACGTTTCCGATGCGGAAGTTGAGAAAGCCTGCAAAGCAGTTGGCCTCCACCATTACATCAA
AACCCTTCCCAAAGGATACGACACGGTACTTGGCGACAATGCCAGCTTGTCCCAGGGGCAGAAGCAGCTTATTACTATTG
CACGCGCTATGATTGCAAATGCGCCGATTCTGATTCTGGATGAGGCAACAAGCTCTGTGGATACTCGAACTGAAACGCTT
ATCCAAAATGCTATGGATAAGCTGATGGCAGGCAGAACTTCCTTTGTTATTGCACACCGCCTGTCAACCATCCGTAATTC
TGATTTGATTCTGGTTATGAAGGATGGCGACATCATTGAGAGTGGCAATCACGATACTTTGATGGCACAGGGCGGTTTCT
ATACCGAACTATACAACAGTCAGTTTGTAGATATCGTCGAGTCGGCGTAA

Domains

Predicted by InterproScan.

ABC transporter transmembrane region (ABC_membrane)

(66-341)

ABC transporter (ABC_tran)

(404-551)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrQ Streptococcus mutans UA159

56.348

91.415

0.515

Multiple sequence alignment