Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrP   Type   Regulator
Locus tag   E4L76_RS03045 Genome accession   NZ_LR215983
Coordinates   659008..660771 (+) Length   587 a.a.
NCBI ID   WP_133964854.1    Uniprot ID   -
Organism   Eubacterium limosum isolate Eubacterium limosum 81C1     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 654008..665771
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  E4L76_RS03020 - 654675..655385 (-) 711 WP_133964850.1 ATP-binding protein -
  E4L76_RS03025 - 655609..656100 (+) 492 WP_013381352.1 small multi-drug export protein -
  E4L76_RS03030 - 656105..656902 (+) 798 WP_133964851.1 Cof-type HAD-IIB family hydrolase -
  E4L76_RS03035 - 657096..658136 (-) 1041 WP_133964852.1 HAMP domain-containing sensor histidine kinase -
  E4L76_RS03040 - 658133..658807 (-) 675 WP_133964853.1 response regulator transcription factor -
  E4L76_RS03045 rcrP 659008..660771 (+) 1764 WP_133964854.1 ABC transporter ATP-binding protein Regulator
  E4L76_RS03050 rcrQ 660764..662653 (+) 1890 WP_133964855.1 ABC transporter ATP-binding protein Regulator
  E4L76_RS03055 - 662978..664210 (+) 1233 WP_133964856.1 aminopeptidase P N-terminal domain-containing protein -

Sequence

Protein


Download         Length: 587 a.a.        Molecular weight: 64974.55 Da        Isoelectric Point: 6.0436

>NTDB_id=1126073 E4L76_RS03045 WP_133964854.1 659008..660771(+) (rcrP) [Eubacterium limosum isolate Eubacterium limosum 81C1]
MLKIFKYLRKKDWGLILLSLVFIIIQVWLDLKMPDYMSGITRLVQTEGSAMADILISGGKMLLCTLGSFAAAVVVGFLVA
KIAAGLSMRLREKVYDKTMSFSMEEINGFSTASLIIRSTNDITQIQMCVTMGLQAIIKAPIMAVWAIVKIAGKGWEWTAV
TGGAVLILVLMLGIIIALTMPKFKSIQKYTDNLNRVTRENLTGLRVVRAYHAENYQEARFEKANNDLTQNNLFTSRAMAF
MQPGMQLLMSGLGLAIYWIGVYLIDGAIGPDKLTLFSDMVVFQQYAMQVVMAFMLLTMTLIILPRAAVSAKRVNEVLDSE
EKIADGTTTGPELYEQGEVEFKNVSFRYPDAEDYILHDINFTAHKGETVAFIGSTGSGKSTLINLVLRFYDTTEGDVLVD
GVNVKEYTQEVLHNKLGYVPQKAVMFSGTVASNVTYGENGKAPAETDDIREAIDIAQATEFVEKMNGTYEATIVQGGTNV
SGGQKQRLAIARAICRRPEIYVFDDSFSALDYKTDRSLRRMLREKTSGTTSLIVAQRIGTIMDADKIIVLDEGKVVGQGT
HHELLKTCPVYLEIAQSQLSKEEIENA

Nucleotide


Download         Length: 1764 bp        

>NTDB_id=1126073 E4L76_RS03045 WP_133964854.1 659008..660771(+) (rcrP) [Eubacterium limosum isolate Eubacterium limosum 81C1]
ATGCTGAAAATATTTAAGTATCTCAGAAAAAAGGACTGGGGACTCATACTTCTCAGTTTGGTCTTTATTATAATCCAGGT
GTGGCTGGATTTAAAAATGCCGGATTATATGTCTGGGATCACCCGTCTGGTGCAAACAGAAGGCAGTGCCATGGCTGATA
TTCTGATCTCCGGTGGTAAAATGCTGCTGTGTACGCTTGGAAGTTTTGCTGCGGCAGTAGTAGTAGGTTTTTTGGTGGCA
AAAATTGCGGCAGGCTTATCTATGAGACTACGGGAAAAGGTATATGATAAAACGATGTCCTTTTCTATGGAAGAAATTAA
CGGATTTTCGACGGCCAGTCTTATTATCCGCTCCACCAACGACATCACACAAATACAGATGTGCGTAACTATGGGATTAC
AAGCTATTATCAAAGCGCCCATTATGGCAGTATGGGCGATTGTAAAAATTGCGGGAAAGGGCTGGGAATGGACGGCAGTT
ACCGGAGGAGCCGTTTTAATCCTTGTTTTAATGCTGGGGATCATCATTGCACTGACTATGCCAAAATTCAAGAGCATTCA
GAAATATACTGATAACCTAAACCGTGTGACCAGAGAAAATCTTACAGGTCTACGTGTAGTCCGTGCATATCATGCAGAGA
ACTATCAGGAAGCCCGTTTTGAAAAAGCCAATAACGACTTAACTCAAAACAACCTGTTTACGAGCCGTGCGATGGCTTTT
ATGCAGCCGGGGATGCAACTTCTGATGTCCGGCCTGGGACTTGCCATCTACTGGATTGGTGTTTATTTGATTGACGGAGC
TATTGGCCCAGATAAGTTGACGCTGTTTTCCGATATGGTTGTTTTCCAACAGTATGCGATGCAAGTAGTTATGGCATTTA
TGTTATTGACAATGACACTTATTATTTTGCCTCGTGCTGCTGTTTCTGCAAAGCGTGTCAATGAGGTGCTGGATAGCGAA
GAAAAGATTGCGGATGGAACCACTACTGGCCCTGAGTTATATGAACAGGGGGAAGTTGAATTTAAGAACGTCAGCTTCCG
TTATCCTGACGCAGAGGATTATATTCTTCATGACATTAATTTCACCGCTCATAAAGGCGAAACAGTGGCTTTTATCGGCT
CTACAGGTTCCGGCAAAAGCACATTGATCAATCTTGTACTACGGTTTTATGATACTACCGAAGGCGATGTGCTTGTGGAT
GGCGTCAATGTTAAGGAATATACGCAGGAAGTCCTTCACAACAAGTTGGGCTATGTACCTCAAAAAGCAGTCATGTTCAG
CGGAACTGTAGCTTCTAATGTAACATACGGTGAGAACGGTAAGGCTCCCGCCGAGACGGACGACATCCGGGAAGCTATTG
ACATTGCCCAAGCAACTGAATTTGTGGAAAAAATGAACGGCACTTATGAAGCGACCATTGTGCAGGGTGGCACGAATGTG
TCTGGTGGCCAAAAACAGAGGCTTGCCATTGCAAGGGCAATCTGCCGACGGCCGGAAATCTATGTATTTGACGATTCTTT
TTCAGCTTTGGATTATAAGACAGATCGTAGTTTGAGAAGAATGCTGAGAGAAAAGACAAGCGGCACAACCAGCCTGATTG
TTGCTCAAAGAATCGGAACGATCATGGATGCTGATAAGATTATTGTTTTGGATGAAGGCAAGGTGGTTGGGCAAGGTACT
CATCATGAGCTTTTAAAGACCTGTCCTGTCTACCTGGAAATTGCTCAATCTCAGTTGTCAAAGGAGGAGATCGAAAATGC
CTGA

Domains

Predicted by InterproScan.

ABC transporter (ABC_tran)

(356-506)

ABC transporter transmembrane region (ABC_membrane)

(17-292)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrP Streptococcus mutans UA159

53.422

100

0.545

Multiple sequence alignment