Detailed information    

insolico Bioinformatically predicted

Overview

Name   comF   Type   Machinery gene
Locus tag   E0E43_RS05495 Genome accession   NZ_LR215974
Coordinates   1197028..1197681 (+) Length   217 a.a.
NCBI ID   WP_130913819.1    Uniprot ID   -
Organism   Chryseobacterium taihuense strain 3012STDY6944375     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1192028..1202681
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  E0E43_RS05475 (NCTC12078_01114) - 1193848..1194780 (+) 933 WP_317127536.1 AMP-binding protein -
  E0E43_RS05480 (NCTC12078_01115) arfB 1194801..1195193 (+) 393 WP_130913816.1 alternative ribosome rescue aminoacyl-tRNA hydrolase ArfB -
  E0E43_RS05485 (NCTC12078_01116) - 1195241..1195909 (+) 669 WP_130913817.1 hypothetical protein -
  E0E43_RS05490 (NCTC12078_01117) - 1195937..1196911 (+) 975 WP_130913818.1 deoxyhypusine synthase family protein -
  E0E43_RS05495 (NCTC12078_01118) comF 1197028..1197681 (+) 654 WP_130913819.1 ComF family protein Machinery gene
  E0E43_RS05500 (NCTC12078_01119) - 1197725..1198924 (-) 1200 WP_130913820.1 cytochrome-c peroxidase -
  E0E43_RS05505 (NCTC12078_01120) - 1198978..1199421 (-) 444 WP_130913821.1 hypothetical protein -
  E0E43_RS05510 (NCTC12078_01121) - 1199414..1199698 (-) 285 WP_089745281.1 hypothetical protein -
  E0E43_RS05515 (NCTC12078_01122) - 1199688..1200215 (-) 528 WP_130913822.1 RNA polymerase sigma factor -
  E0E43_RS05520 (NCTC12078_01123) upp 1200348..1201001 (-) 654 WP_130913823.1 uracil phosphoribosyltransferase -
  E0E43_RS05525 (NCTC12078_01124) der 1201083..1202393 (-) 1311 WP_130913824.1 ribosome biogenesis GTPase Der -

Sequence

Protein


Download         Length: 217 a.a.        Molecular weight: 25604.67 Da        Isoelectric Point: 8.0443

>NTDB_id=1126011 E0E43_RS05495 WP_130913819.1 1197028..1197681(+) (comF) [Chryseobacterium taihuense strain 3012STDY6944375]
MILDLLFPNRCLECNRIIESELLVCPVCFSQIQFTYHDFLSENSFKERCKLLFPLENAFALMEFEKESLSRKIIHELKYK
SREKTGKILAEWTTEYLDFKDEKPDLMVTVPLHPRKTKERGYNQLHLFTERLSQSYQIPFDHTLIKRNYYSSAQALKNRK
RRLENQNTFSVTKTIEDTHILLIDDVFTTGNTLASVVWEILKKGNNKISVLVMAMDV

Nucleotide


Download         Length: 654 bp        

>NTDB_id=1126011 E0E43_RS05495 WP_130913819.1 1197028..1197681(+) (comF) [Chryseobacterium taihuense strain 3012STDY6944375]
ATGATTTTAGATTTGTTATTTCCCAACCGCTGTCTGGAATGCAACCGGATCATCGAAAGCGAATTATTGGTTTGCCCAGT
CTGTTTCAGCCAGATTCAATTTACCTATCATGACTTTTTATCTGAAAATTCATTCAAAGAGAGATGTAAATTACTTTTTC
CGCTGGAAAATGCTTTTGCACTCATGGAATTTGAAAAAGAAAGCCTTAGCCGCAAAATCATTCATGAATTAAAATATAAA
AGCAGAGAAAAAACCGGAAAGATTTTAGCAGAATGGACTACAGAATATCTTGATTTTAAAGATGAGAAACCTGACTTAAT
GGTTACTGTTCCACTGCACCCCAGGAAAACAAAAGAAAGAGGATATAATCAGCTTCACCTTTTTACCGAACGGCTTTCCC
AGTCATATCAAATCCCTTTTGACCATACTTTAATCAAACGAAATTATTATTCTTCAGCCCAGGCTCTCAAGAACAGAAAA
CGCAGGCTCGAAAACCAAAACACATTTTCGGTTACCAAAACAATCGAAGACACTCATATACTTCTTATTGATGATGTATT
TACAACAGGAAACACGCTGGCTTCCGTTGTATGGGAAATTTTAAAGAAAGGAAATAATAAGATAAGTGTCTTGGTTATGG
CAATGGATGTGTGA

Domains

Predicted by InterproScan.

Double zinc ribbon domain (DZR_2)

(2-34)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comF Riemerella anatipestifer ATCC 11845 = DSM 15868

53.704

99.539

0.535

Multiple sequence alignment