Detailed information    

insolico Bioinformatically predicted

Overview


Name   kpsS   Type   Regulator
Locus tag   CJ8421_RS07010 Genome accession   NZ_CP005388
Coordinates   1344291..1345475 (-) Length   394 a.a.
NCBI ID   WP_002780434.1    Uniprot ID   A0A0U3A9V8
Organism   Campylobacter jejuni subsp. jejuni CG8421     
Function   repress natural transformation (predicted from homology)   
Competence regulation

Genomic Context


Location: 1339291..1350475
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CJ8421_RS06985 (CJ8421_07085) fliL 1340439..1340975 (+) 537 WP_002780442.1 flagellar basal body-associated protein FliL -
  CJ8421_RS06990 (CJ8421_07090) acpS 1340975..1341322 (+) 348 WP_002860384.1 holo-ACP synthase -
  CJ8421_RS06995 (CJ8421_07095) - 1341323..1341742 (-) 420 WP_002780440.1 hypothetical protein -
  CJ8421_RS07000 (CJ8421_07100) - 1341739..1343100 (-) 1362 WP_002860383.1 cytochrome P450 -
  CJ8421_RS07005 (CJ8421_07105) - 1343097..1344218 (-) 1122 WP_002860382.1 hypothetical protein -
  CJ8421_RS07010 (CJ8421_07110) kpsS 1344291..1345475 (-) 1185 WP_002780434.1 capsule polysaccharide modification protein KpsS Regulator
  CJ8421_RS07015 (CJ8421_07115) kpsC 1345472..1347541 (-) 2070 WP_002923499.1 capsular polysaccharide biosynthesis protein -
  CJ8421_RS07020 (CJ8421_07120) cysC 1347538..1348050 (-) 513 WP_002860379.1 cytidine diphosphoramidate kinase -
  CJ8421_RS07025 (CJ8421_07125) - 1348040..1348801 (-) 762 WP_002860378.1 CTP:phosphoglutamine cytidylyltransferase -
  CJ8421_RS07030 (CJ8421_07130) - 1348803..1349405 (-) 603 WP_002860377.1 gamma-glutamyl-CDP-amidate hydrolase -

Sequence


Protein


Download         Length: 394 a.a.        Molecular weight: 46824.57 Da        Isoelectric Point: 9.9369

>NTDB_id=112569 CJ8421_RS07010 WP_002780434.1 1344291..1345475(-) (kpsS) [Campylobacter jejuni subsp. jejuni CG8421]
MRFSTKIKKEFSGKNVLLLQGPVGNFFHHLAIKMKKKQTKVFKLNFNGGDFFFYPSGTRCKCDEKDLENFYRDFFQSKKI
DAILMYNDCRIIHAKAIKVAKELGIEIWIFEEGYLRPYCITLEKDGVNANSSLPRDKNFYLSQNIFTKESIKEIPGGFKF
MAFDAFLYWLFAFILAPFFNNKLHHRTLYPFEFLFWFRSLYRKYLYKITEKKLNEKIYNLEKKYFLAILQVYSDTQIKYH
YKKSIEHFIEETILSFANHARAKSYLVFKHHPMDRGYKNYSKLINDLSQKYHVEGRVLYVHDTHLPVLLRKALGCITINS
TVGLSAILEGCPTKVCGNAFYDFEGLSYPKKLQFFWREAHAYKPNPVLVCNFKKYLLQTNQFNGNFYKNFFLDK

Nucleotide


Download         Length: 1185 bp        

>NTDB_id=112569 CJ8421_RS07010 WP_002780434.1 1344291..1345475(-) (kpsS) [Campylobacter jejuni subsp. jejuni CG8421]
ATGAGATTTAGCACTAAAATTAAAAAAGAATTTAGCGGTAAAAATGTTTTACTCTTGCAAGGGCCTGTGGGAAATTTTTT
TCATCATCTTGCAATAAAAATGAAAAAAAAACAAACCAAAGTTTTTAAACTCAATTTTAACGGTGGAGATTTTTTTTTCT
ATCCTAGTGGAACGAGGTGTAAGTGCGATGAAAAAGATCTTGAAAATTTCTATAGAGATTTTTTTCAAAGCAAAAAAATC
GATGCTATTTTAATGTATAATGATTGTCGTATTATCCATGCTAAGGCTATTAAAGTGGCTAAAGAATTAGGAATTGAAAT
ATGGATTTTTGAAGAAGGATATTTAAGGCCTTATTGTATTACTTTGGAAAAAGATGGGGTGAATGCAAATTCTTCTTTAC
CGCGTGATAAAAATTTTTATCTTTCTCAAAATATTTTTACCAAAGAAAGCATAAAAGAAATTCCAGGTGGATTTAAATTT
ATGGCTTTTGATGCTTTTTTGTATTGGTTGTTTGCTTTTATTTTGGCTCCATTTTTTAACAACAAACTTCATCATCGCAC
TTTATATCCTTTTGAATTTTTATTTTGGTTTAGATCATTGTATAGAAAGTATCTTTATAAGATTACAGAAAAAAAACTAA
ATGAAAAGATTTATAATTTAGAAAAAAAGTACTTTTTGGCGATTTTACAAGTTTATAGCGATACGCAAATTAAATATCAT
TACAAAAAAAGCATAGAGCACTTTATAGAGGAAACCATACTTTCTTTTGCAAACCATGCAAGAGCTAAATCTTATCTAGT
TTTTAAACACCATCCCATGGATAGGGGCTATAAGAATTATTCTAAACTCATAAATGATTTAAGTCAAAAATATCATGTAG
AAGGAAGGGTTTTATATGTTCATGATACCCACTTGCCAGTTCTTTTAAGAAAGGCTTTGGGTTGTATTACTATAAATTCA
ACAGTAGGCCTTAGTGCTATTTTAGAAGGCTGTCCGACTAAGGTTTGTGGCAATGCTTTTTATGATTTTGAAGGCTTATC
TTATCCAAAAAAACTTCAATTTTTTTGGCGTGAAGCTCATGCTTATAAACCCAATCCTGTTTTGGTATGTAATTTTAAAA
AATATCTTTTACAAACTAATCAATTCAACGGCAATTTTTATAAAAATTTCTTTTTAGACAAATAA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure
  AlphaFold DB A0A0U3A9V8

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  kpsS Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

98.223

100

0.982


Multiple sequence alignment