Detailed information    

insolico Bioinformatically predicted

Overview

Name   Cj0683   Type   Machinery gene
Locus tag   CJ8421_RS03340 Genome accession   NZ_CP005388
Coordinates   626854..627291 (+) Length   145 a.a.
NCBI ID   WP_002852324.1    Uniprot ID   A0AA44HIV8
Organism   Campylobacter jejuni subsp. jejuni CG8421     
Function   initialization of DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 621854..632291
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CJ8421_RS03320 (CJ8421_03340) kdpD 622346..624166 (+) 1821 WP_002860007.1 sensor histidine kinase KdpD -
  CJ8421_RS03325 (CJ8421_03345) uvrB 624268..626241 (-) 1974 WP_002860008.1 excinuclease ABC subunit UvrB -
  CJ8421_RS03330 (CJ8421_03350) - 626395..626625 (+) 231 WP_002852327.1 hypothetical protein -
  CJ8421_RS03335 (CJ8421_03355) - 626615..626857 (+) 243 WP_002854947.1 hypothetical protein -
  CJ8421_RS03340 (CJ8421_03360) Cj0683 626854..627291 (+) 438 WP_002852324.1 prepilin-type N-terminal cleavage/methylation domain-containing protein Machinery gene
  CJ8421_RS03345 (CJ8421_03365) priA 627273..629126 (+) 1854 WP_002860009.1 primosomal protein N' -
  CJ8421_RS03350 (CJ8421_03370) cipA 629136..630530 (-) 1395 WP_002860010.1 DUF2972 domain-containing protein -
  CJ8421_RS03355 (CJ8421_03375) ispG 630676..631749 (+) 1074 WP_002854766.1 flavodoxin-dependent (E)-4-hydroxy-3-methylbut-2-enyl-diphosphate synthase -

Sequence

Protein


Download         Length: 145 a.a.        Molecular weight: 16765.76 Da        Isoelectric Point: 8.0993

>NTDB_id=112558 CJ8421_RS03340 WP_002852324.1 626854..627291(+) (Cj0683) [Campylobacter jejuni subsp. jejuni CG8421]
MNKAFTLLELVFVILILGILSSLSLSFINTTKDEVKILKLKMDYEMLSSALALMRSQMRLKNLNFPEILDNAQNNQAKEK
LFYCLNDCDYSLLDTPIYSDFKSWIKIGKNHYRFALNAKEMVEFIYDSKEGLLKCIGSSRCKDLI

Nucleotide


Download         Length: 438 bp        

>NTDB_id=112558 CJ8421_RS03340 WP_002852324.1 626854..627291(+) (Cj0683) [Campylobacter jejuni subsp. jejuni CG8421]
ATGAACAAAGCTTTTACTCTGCTTGAGCTTGTTTTTGTGATTTTGATTTTGGGAATTTTGTCAAGCTTATCTTTATCTTT
TATCAATACTACAAAAGATGAGGTTAAAATTTTAAAATTAAAAATGGACTATGAAATGCTAAGCTCAGCCCTTGCTTTAA
TGCGTAGTCAAATGAGACTTAAAAATTTAAATTTTCCAGAAATTTTAGATAATGCGCAAAACAATCAAGCCAAAGAAAAA
CTCTTTTATTGTTTAAATGATTGTGATTATTCTTTGCTTGATACACCTATTTATTCTGATTTTAAATCTTGGATAAAAAT
AGGTAAAAATCACTATAGATTTGCATTAAATGCTAAAGAGATGGTTGAATTTATTTATGATTCTAAAGAAGGTTTGTTAA
AATGTATAGGAAGTTCTAGATGCAAAGATCTGATATAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(2-23)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  Cj0683 Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

100

100

1

Multiple sequence alignment