Detailed information    

insolico Bioinformatically predicted

Overview

Name   priA   Type   Machinery gene
Locus tag   LA58_RS03000 Genome accession   NZ_CP009420
Coordinates   594899..597088 (+) Length   729 a.a.
NCBI ID   WP_002221373.1    Uniprot ID   -
Organism   Neisseria meningitidis strain NM3682     
Function   DNA puliing through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 589899..602088
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LA58_RS02985 (LA58_03180) - 590479..591657 (+) 1179 WP_002221377.1 MacA family efflux pump subunit -
  LA58_RS02990 (LA58_03185) - 591723..593657 (+) 1935 WP_002221376.1 MacB family efflux pump subunit -
  LA58_RS02995 (LA58_03190) - 593960..594760 (-) 801 WP_002247792.1 DsbC family protein -
  LA58_RS03000 (LA58_03195) priA 594899..597088 (+) 2190 WP_002221373.1 primosomal protein N' Machinery gene
  LA58_RS03005 (LA58_03200) - 597135..598208 (-) 1074 WP_002221372.1 NnrS family protein -
  LA58_RS03010 (LA58_03205) - 598256..599212 (-) 957 WP_002247793.1 IS110-like element ISNme5 family transposase -

Sequence

Protein


Download         Length: 729 a.a.        Molecular weight: 81038.78 Da        Isoelectric Point: 7.9199

>NTDB_id=112491 LA58_RS03000 WP_002221373.1 594899..597088(+) (priA) [Neisseria meningitidis strain NM3682]
MIYHRIAVNVPLSDGLLTYSHSDPLPPGTRVLVPFRNKTVVGMVWETDIAPDMDTARILSVRTAFVEEKPLPQSWRDLLA
FTSRYYHYPTGQAVFAALPQGLKETRAVEMPQPPLFYALNEAGRAQTPPPARFNKKAALWDALLSGGMTMAALKQVNAQA
AKLIEDWAEQGWIETTEAAKPVLRPYHGQASHSEFVLNANQQKASDAIQTALGRFQPFLLYGITGSGKTEVYFDAMAKVL
AQGRQVLFLLPEINLTPQLLKRVENRFADVPTAVLHSRMAAGRRTQDYLSAMSGQAKLVIGTRLAVFTPMDDVGLIVVDE
EHDGSFKQDNELRYHARDLAVWRAKQSGCPIILGSATPSLESWHKAQSGAYRLLQLTERAHTAAQLPQVDILNVGRLKLD
NGFSPQALQLLKQNFEAGGMSLVYLNRRGFAPALFCSDCGHTFGCPNCSAKMVLHQRARQLRCHHCDHREPVPFKCPDCG
NQDLTAVGHGTQRVEETLRAFLPKAAVVRVDRDSTAHKNDWADLYRRIADNEIDILVGTQMLAKGHDFARLNLVIVLNAD
GSLYSADFRAPERLFAELMQVSGRAGRADKPGKVLIQTQLPEHPVFAAVKAQDYAVFAENELNERQMFAMPPFGFQTAVR
ADAPRVADAMEFLNAAKETLAPLLPESVSQFGAAPMLMVRLAERERAQIFLESTSRQDLHRAVSLWVQVLQQNRDGKIRW
SVDVDPQEA

Nucleotide


Download         Length: 2190 bp        

>NTDB_id=112491 LA58_RS03000 WP_002221373.1 594899..597088(+) (priA) [Neisseria meningitidis strain NM3682]
ATGATCTACCACCGCATCGCCGTAAACGTGCCGCTTTCAGACGGCCTTTTGACTTATTCCCATTCCGATCCGCTTCCTCC
AGGAACGCGGGTGCTTGTGCCTTTCCGCAATAAAACCGTGGTCGGGATGGTGTGGGAAACGGATATTGCGCCGGATATGG
ATACGGCGCGGATTTTGAGCGTTCGGACGGCCTTTGTGGAAGAAAAGCCGTTGCCTCAAAGCTGGCGTGATTTGTTGGCA
TTTACGTCGCGTTATTACCACTATCCGACCGGGCAGGCGGTGTTTGCCGCGCTGCCGCAGGGTTTGAAGGAAACGCGCGC
GGTGGAAATGCCGCAGCCGCCGTTGTTTTATGCTTTGAACGAAGCGGGCAGGGCGCAAACGCCGCCGCCGGCTCGGTTCA
ACAAAAAAGCGGCTTTGTGGGATGCGCTGCTGTCGGGCGGAATGACGATGGCGGCGTTGAAGCAGGTGAACGCGCAGGCG
GCGAAATTAATCGAAGATTGGGCGGAACAGGGTTGGATTGAAACGACGGAAGCGGCGAAACCTGTATTGAGGCCGTACCA
CGGGCAGGCTTCGCACTCTGAATTTGTGTTGAATGCCAACCAGCAGAAAGCTTCCGATGCCATTCAGACGGCATTGGGAC
GCTTCCAGCCGTTTCTGCTGTACGGCATCACCGGCAGCGGCAAGACCGAGGTGTATTTTGATGCGATGGCGAAAGTGTTG
GCGCAGGGGCGGCAGGTGTTGTTTCTGTTGCCCGAAATCAACCTCACGCCGCAGCTTTTGAAGCGGGTGGAAAACCGTTT
TGCCGACGTACCGACCGCCGTGTTGCACAGCCGGATGGCGGCAGGCAGGCGCACGCAGGATTATCTGAGCGCGATGTCGG
GGCAGGCGAAGCTGGTCATCGGCACGCGGCTGGCGGTGTTCACGCCGATGGATGATGTCGGGCTGATTGTGGTCGATGAG
GAACACGACGGCTCGTTCAAACAGGACAACGAATTGCGCTATCACGCCCGCGATTTGGCGGTGTGGCGGGCGAAGCAGAG
CGGCTGCCCGATCATATTGGGCAGTGCCACCCCCAGCTTGGAGAGTTGGCACAAGGCGCAAAGCGGCGCGTACCGCCTGC
TGCAACTGACCGAACGCGCCCATACCGCCGCGCAACTGCCGCAAGTGGACATCCTCAACGTAGGCCGTCTGAAACTCGAC
AACGGTTTCTCGCCGCAAGCCTTGCAGCTTTTGAAACAGAATTTTGAAGCGGGCGGCATGTCGCTGGTGTACCTCAACCG
TCGCGGTTTCGCGCCAGCGCTGTTTTGCAGCGACTGCGGCCATACCTTCGGCTGCCCGAACTGCTCCGCCAAAATGGTGC
TGCACCAACGTGCCCGCCAACTGCGCTGCCACCACTGCGACCACCGCGAACCCGTCCCGTTCAAATGCCCCGACTGCGGC
AACCAAGATCTGACCGCCGTCGGACACGGCACGCAGCGCGTCGAAGAAACCCTGCGCGCCTTCCTGCCCAAGGCAGCCGT
CGTCCGTGTTGACAGGGACAGCACCGCGCACAAAAACGACTGGGCGGATTTGTACCGCCGCATTGCCGACAACGAAATCG
ACATTCTGGTCGGCACGCAGATGCTCGCCAAAGGGCATGATTTCGCGCGGCTCAACCTCGTTATCGTGTTGAACGCCGAC
GGCAGCCTGTACAGCGCGGACTTTCGCGCCCCGGAAAGGCTGTTCGCCGAGCTGATGCAGGTGTCCGGCAGGGCGGGGCG
CGCCGACAAACCCGGCAAGGTGTTGATACAGACCCAACTGCCCGAACATCCCGTCTTCGCCGCCGTCAAAGCGCAGGATT
ATGCCGTGTTCGCCGAAAACGAATTGAACGAGCGGCAAATGTTCGCGATGCCGCCCTTCGGTTTCCAGACCGCCGTCCGC
GCCGATGCGCCGCGTGTTGCCGATGCGATGGAATTTCTCAACGCCGCCAAAGAAACCCTCGCCCCGCTGTTGCCCGAAAG
CGTTTCCCAGTTTGGCGCGGCTCCGATGCTGATGGTGCGCCTTGCCGAACGCGAACGCGCGCAAATCTTCCTCGAATCAA
CATCCCGACAAGATTTGCACCGAGCCGTGAGTTTGTGGGTGCAGGTGTTGCAGCAAAACAGGGACGGCAAAATCCGATGG
TCGGTGGATGTCGATCCGCAGGAGGCTTGA

Domains

Predicted by InterProScan.

Primosomal protein N C-terminal domain (PriA_C)

(632-726)

DEAD/DEAH box helicase (DEAD)

(207-361)

Helicase conserved C-terminal domain (Helicase_C)

(516-588)

PriA DNA helicase Cys-rich region (CRR) domain (Zn_ribbon_PriA)

(445-471)

3DNA-binding domain (3BD) (PriA_3primeBD)

(5-99)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  priA Acinetobacter baumannii D1279779

36.351

100

0.369

Multiple sequence alignment