Detailed information    

insolico Bioinformatically predicted

Overview

Name   ccrA   Type   Machinery gene
Locus tag   EL299_RS13980 Genome accession   NZ_LR134536
Coordinates   2740610..2741971 (-) Length   453 a.a.
NCBI ID   WP_001631036.1    Uniprot ID   -
Organism   Staphylococcus epidermidis strain NCTC13924     
Function   promote SCCmec transfer (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2735610..2746971
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EL299_RS14480 - 2735710..2735841 (-) 132 WP_257473760.1 hypothetical protein -
  EL299_RS14515 - 2735967..2736082 (+) 116 Protein_2625 type I restriction enzyme endonuclease domain-containing protein -
  EL299_RS13945 (NCTC13924_02755) - 2736138..2736635 (-) 498 WP_012086596.1 hypothetical protein -
  EL299_RS13950 (NCTC13924_02756) - 2736642..2736920 (-) 279 WP_012086594.1 hypothetical protein -
  EL299_RS13955 (NCTC13924_02757) - 2737218..2737721 (-) 504 WP_012086592.1 DUF1643 domain-containing protein -
  EL299_RS13960 (NCTC13924_02758) - 2737736..2738047 (-) 312 WP_000700851.1 DUF960 family protein -
  EL299_RS13970 (NCTC13924_02760) - 2738134..2738484 (-) 351 WP_000849672.1 SAUGI family uracil-DNA glycosylase inhibitor -
  EL299_RS13975 (NCTC13924_02761) ccrB 2738985..2740613 (-) 1629 WP_001631035.1 cassette chromosome recombinase CcrB Machinery gene
  EL299_RS13980 (NCTC13924_02762) ccrA 2740610..2741971 (-) 1362 WP_001631036.1 cassette chromosome recombinase CcrA Machinery gene
  EL299_RS13985 (NCTC13924_02763) - 2742158..2742787 (-) 630 Protein_2633 hypothetical protein -
  EL299_RS14235 - 2742796..2743134 (+) 339 Protein_2634 recombinase family protein -
  EL299_RS13995 (NCTC13924_02765) - 2743246..2743605 (-) 360 WP_001631039.1 hypothetical protein -
  EL299_RS14000 (NCTC13924_02766) - 2743812..2744138 (+) 327 WP_000391495.1 ArsR/SmtB family transcription factor -
  EL299_RS14010 (NCTC13924_02768) - 2744468..2746393 (+) 1926 WP_002485723.1 heavy metal translocating P-type ATPase -

Sequence

Protein


Download         Length: 453 a.a.        Molecular weight: 53316.45 Da        Isoelectric Point: 9.8596

>NTDB_id=1124199 EL299_RS13980 WP_001631036.1 2740610..2741971(-) (ccrA) [Staphylococcus epidermidis strain NCTC13924]
MEEAIAYVRQSTLKQQSLATQKSLIMDTAKQYGWSNVAFYDDKKTGRHTKRSGYQKMVEIITSGKCKVLCCYRLNRLHRN
LKNAIQFFEICKKHHITIISVNDGYFDLSKEFDCFRLNILMSLAEMESNNISEQTKNGIREKAKQGKLITTHAPFGYRYR
KGCFVVQEEEAYTVKSVYRWYLQGLGYKKISQHLDSNPNLIPRKPYQVRNILLNPNYCGRVINKYGTFNDIVPPIIDIDT
FEEAQERRIHKQLNRSNSRNKLKRRIKCPYCQSTLTNLTIKKENYSLRYYVCPKNMNDAYRTCPFKSINAPELESEVLDT
CKKYFEEQSFHKRLNNTILKVLKQQQMKHKETHLTQEQLIEKLAQNRIDVKTFKRLSASCKSEENYSTYSTYQIDDKLKY
VIKNKITLQDIAPFIDCIKITQTKQLQGIYFKNSPLNIVEQSHLITPERNEVI

Nucleotide


Download         Length: 1362 bp        

>NTDB_id=1124199 EL299_RS13980 WP_001631036.1 2740610..2741971(-) (ccrA) [Staphylococcus epidermidis strain NCTC13924]
ATGGAAGAAGCGATTGCTTATGTACGTCAAAGTACACTCAAACAACAAAGCTTAGCTACTCAAAAATCGCTCATTATGGA
TACCGCTAAGCAATATGGATGGTCTAATGTGGCGTTTTATGATGATAAGAAAACAGGTCGACATACAAAACGTTCAGGTT
ATCAAAAAATGGTAGAAATAATTACGTCTGGAAAATGTAAAGTATTGTGTTGCTATCGCTTGAACCGACTACATCGTAAT
TTGAAAAATGCCATACAATTCTTTGAAATTTGTAAAAAGCATCACATCACAATCATCAGTGTTAACGATGGATATTTTGA
TTTGTCTAAAGAGTTTGATTGCTTTCGTTTGAACATACTTATGAGTCTAGCGGAAATGGAATCAAACAATATCAGCGAAC
AAACAAAAAATGGGATTAGAGAAAAAGCCAAACAAGGTAAGCTAATCACAACTCATGCTCCGTTTGGCTATCGTTATAGA
AAAGGTTGTTTTGTTGTACAAGAAGAAGAAGCGTATACAGTTAAATCGGTTTATCGCTGGTACTTACAAGGTCTAGGCTA
CAAAAAGATTTCCCAACATTTGGATAGTAATCCTAACCTTATTCCTCGTAAGCCCTATCAAGTTAGAAATATTCTCTTGA
ACCCTAACTATTGCGGTCGTGTCATCAATAAATATGGCACGTTTAATGATATCGTTCCACCTATTATTGATATTGATACA
TTTGAAGAAGCACAAGAGCGTCGTATTCATAAACAACTCAATCGATCCAATTCTAGAAATAAGCTAAAGCGACGAATCAA
ATGTCCTTACTGTCAATCAACATTAACAAACTTAACGATAAAAAAAGAGAACTATTCTCTACGTTACTATGTTTGTCCTA
AAAATATGAATGACGCTTATCGTACATGCCCATTTAAAAGTATCAATGCACCAGAACTTGAAAGTGAAGTGCTCGACACT
TGTAAAAAGTATTTTGAAGAACAATCGTTTCATAAACGATTGAATAACACAATACTCAAAGTCCTAAAACAGCAACAAAT
GAAGCATAAAGAAACCCATCTAACACAAGAACAACTTATCGAAAAGCTAGCTCAAAATCGTATTGATGTAAAAACGTTCA
AACGTTTATCTGCTAGTTGTAAAAGTGAAGAGAATTACTCTACTTATTCAACCTACCAAATCGATGACAAATTAAAATAT
GTCATAAAAAATAAAATAACTTTACAGGATATAGCACCTTTTATCGATTGCATCAAAATAACTCAAACTAAACAATTACA
AGGAATCTACTTTAAAAACAGTCCACTCAATATCGTTGAACAATCACATTTAATAACTCCTGAAAGGAATGAAGTAATAT
GA

Domains

Predicted by InterproScan.

Resolvase, N terminal domain (Resolvase)

(4-147)

Recombinase (Recombinase)

(168-248)

Recombinase zinc beta ribbon domain (Zn_ribbon_recom)

(262-322)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ccrA Staphylococcus aureus COL

54.628

97.792

0.534
  ccrA Staphylococcus aureus N315

50.564

97.792

0.494

Multiple sequence alignment