Detailed information
Bioinformatically predicted
Overview
| Name | abrB | Type | Regulator |
| Locus tag | YBT1520_RS00220 | Genome accession | NZ_CP004858 |
| Coordinates | 40746..41030 (-) | Length | 94 a.a. |
| NCBI ID | WP_000843036.1 | Uniprot ID | A0A9W5VII1 |
| Organism | Bacillus thuringiensis serovar kurstaki str. YBT-1520 | ||
| Function | repression of comK; repression of rok (predicted from homology) Competence regulation |
||
Genomic Context
Location: 35746..46030
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| YBT1520_RS00185 (YBT1520_00125) | tmk | 35938..36564 (+) | 627 | WP_000677214.1 | dTMP kinase | - |
| YBT1520_RS00190 (YBT1520_00130) | holB | 36600..37583 (+) | 984 | WP_000169563.1 | DNA polymerase III subunit delta' | - |
| YBT1520_RS00195 (YBT1520_00135) | - | 37589..38416 (+) | 828 | WP_000272429.1 | stage 0 sporulation family protein | - |
| YBT1520_RS00200 (YBT1520_00140) | yabA | 38431..38781 (+) | 351 | WP_000412063.1 | DNA replication initiation control protein YabA | - |
| YBT1520_RS00205 (YBT1520_00145) | - | 38864..39604 (+) | 741 | WP_001055369.1 | tRNA1(Val) (adenine(37)-N6)-methyltransferase | - |
| YBT1520_RS00210 (YBT1520_00150) | - | 39591..39881 (+) | 291 | WP_000414350.1 | GIY-YIG nuclease family protein | - |
| YBT1520_RS00215 (YBT1520_00155) | rsmI | 39850..40725 (+) | 876 | WP_000267822.1 | 16S rRNA (cytidine(1402)-2'-O)-methyltransferase | - |
| YBT1520_RS00220 (YBT1520_00160) | abrB | 40746..41030 (-) | 285 | WP_000843036.1 | AbrB/MazE/SpoVT family DNA-binding domain-containing protein | Regulator |
| YBT1520_RS00225 (YBT1520_00165) | metG | 41489..43498 (+) | 2010 | WP_071686415.1 | methionine--tRNA ligase | - |
| YBT1520_RS00230 (YBT1520_00170) | - | 43665..44432 (+) | 768 | WP_000895843.1 | TatD family hydrolase | - |
| YBT1520_RS00235 (YBT1520_00175) | rnmV | 44647..45204 (+) | 558 | WP_000692835.1 | ribonuclease M5 | - |
Sequence
Protein
Download Length: 94 a.a. Molecular weight: 10490.17 Da Isoelectric Point: 4.7174
>NTDB_id=112411 YBT1520_RS00220 WP_000843036.1 40746..41030(-) (abrB) [Bacillus thuringiensis serovar kurstaki str. YBT-1520]
MKSTGIVRKVDELGRVVIPIELRRTLGIAEKDALEIYVDDEKIILKKYKPNMTCQVTGEVSDGNLSLAEGKIILSKEGAE
QILNELQDYIETAK
MKSTGIVRKVDELGRVVIPIELRRTLGIAEKDALEIYVDDEKIILKKYKPNMTCQVTGEVSDGNLSLAEGKIILSKEGAE
QILNELQDYIETAK
Nucleotide
Download Length: 285 bp
>NTDB_id=112411 YBT1520_RS00220 WP_000843036.1 40746..41030(-) (abrB) [Bacillus thuringiensis serovar kurstaki str. YBT-1520]
ATGAAATCTACTGGTATTGTTCGTAAAGTTGATGAATTAGGTCGTGTAGTAATTCCAATCGAATTACGCCGTACTTTAGG
TATTGCAGAAAAGGACGCTCTTGAAATCTATGTTGATGACGAAAAAATCATCTTAAAGAAATATAAACCAAACATGACTT
GCCAAGTAACTGGTGAAGTATCTGACGGTAACCTTTCTTTAGCTGAAGGTAAAATCATCTTAAGCAAAGAAGGCGCTGAG
CAAATCTTAAACGAACTTCAAGATTATATCGAAACAGCAAAATAA
ATGAAATCTACTGGTATTGTTCGTAAAGTTGATGAATTAGGTCGTGTAGTAATTCCAATCGAATTACGCCGTACTTTAGG
TATTGCAGAAAAGGACGCTCTTGAAATCTATGTTGATGACGAAAAAATCATCTTAAAGAAATATAAACCAAACATGACTT
GCCAAGTAACTGGTGAAGTATCTGACGGTAACCTTTCTTTAGCTGAAGGTAAAATCATCTTAAGCAAAGAAGGCGCTGAG
CAAATCTTAAACGAACTTCAAGATTATATCGAAACAGCAAAATAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| abrB | Bacillus subtilis subsp. subtilis str. 168 |
85.106 |
100 |
0.851 |