Detailed information    

insolico Bioinformatically predicted

Overview

Name   recG   Type   Machinery gene
Locus tag   EL309_RS01745 Genome accession   NZ_LR134533
Coordinates   351999..354038 (-) Length   679 a.a.
NCBI ID   WP_004284215.1    Uniprot ID   -
Organism   Neisseria weaveri strain NCTC12742     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 346999..359038
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EL309_RS01720 (NCTC12742_00328) purE 347165..347653 (+) 489 WP_004284228.1 5-(carboxyamino)imidazole ribonucleotide mutase -
  EL309_RS01725 (NCTC12742_00329) ribF 347916..348845 (-) 930 WP_004284224.1 bifunctional riboflavin kinase/FAD synthetase -
  EL309_RS01730 (NCTC12742_00330) - 349157..349906 (+) 750 WP_036494849.1 amino acid ABC transporter permease -
  EL309_RS01735 (NCTC12742_00331) - 349973..351244 (-) 1272 WP_232014427.1 hypothetical protein -
  EL309_RS01740 (NCTC12742_00332) - 351664..351837 (-) 174 WP_004284217.1 tetratricopeptide repeat protein -
  EL309_RS01745 (NCTC12742_00333) recG 351999..354038 (-) 2040 WP_004284215.1 ATP-dependent DNA helicase RecG Machinery gene
  EL309_RS01750 (NCTC12742_00334) lysM 354228..354704 (-) 477 WP_004284214.1 peptidoglycan-binding protein LysM -
  EL309_RS01755 (NCTC12742_00335) - 354877..355557 (+) 681 WP_004284213.1 sulfite exporter TauE/SafE family protein -
  EL309_RS01760 (NCTC12742_00336) - 355620..356429 (-) 810 WP_036494852.1 sulfite exporter TauE/SafE family protein -
  EL309_RS01765 (NCTC12742_00337) pssA 356519..357265 (-) 747 WP_004284211.1 CDP-diacylglycerol--serine O-phosphatidyltransferase -
  EL309_RS01770 (NCTC12742_00338) - 357423..358271 (+) 849 WP_050793678.1 mechanosensitive ion channel family protein -
  EL309_RS01775 (NCTC12742_00339) - 358386..358724 (+) 339 WP_004284208.1 carbohydrate porin -

Sequence

Protein


Download         Length: 679 a.a.        Molecular weight: 75560.28 Da        Isoelectric Point: 7.2770

>NTDB_id=1124106 EL309_RS01745 WP_004284215.1 351999..354038(-) (recG) [Neisseria weaveri strain NCTC12742]
MTPEHQKLLKITDTAAKKLEKLNLHTPWDVALHLPLRYEDETHIMPIKDAPIGVPCQVEGVVTLQEVQFKPRKQLIVQIQ
DDSGSVLFLRFIHFYPSHQKQMAQGKRIRAVGEIKHGFYGDEMIHPKIRDADNSSLAESLTPVYPTVNGLNQPTLRRIVQ
TALEALPLHDTLPDELLGRLKLPHLAESLRLLHAPPPDYSIRQLSDGTLPAWQRLKFDELLAQQLSMRLARQKRISGQAA
PLHGTGEWSGKLLNALPFSLTQAQQRVLAEIRADMRQTHPMHRLLQGDVGSGKTIVAALAALTAIEAGSQVAVMAPTEIL
AEQHYLKFKQWFEPLDLSVAWLSGSQRKKAKEQNKAALSDGLAPIAVGTHALFQEDVQFHNLGLVIVDEQHRFGVAQRLA
LKNKGQDVHQLMMSATPIPRTLAMSFFADLDVSVIDELPPNRTPIQTRLVNSLRRPEVEGFVLNTCRKGRQVYWVCPLIE
ESETLQLQTATETQAALQAALPELSIGLVHGRMKATEKAQVMAEFAAGRLNVLVATTVIEVGVDVPNASLMVIEHAERMG
LAQLHQLRGRVGRGAAASTCVLLFAEPLSELAKARLKVIYEHTDGFEIARQDLNIRGPGEFLGARQSGVPMLRFANLEED
LHLLEKAREIAPQLIEENPDIVEAHLNRWLASRESYLGV

Nucleotide


Download         Length: 2040 bp        

>NTDB_id=1124106 EL309_RS01745 WP_004284215.1 351999..354038(-) (recG) [Neisseria weaveri strain NCTC12742]
ATGACACCTGAACACCAAAAGCTGCTCAAAATCACCGACACCGCCGCCAAAAAGCTCGAAAAGCTCAACCTGCACACCCC
GTGGGACGTTGCCCTGCACCTGCCGCTGCGCTACGAAGACGAAACCCACATCATGCCGATAAAAGACGCACCTATCGGCG
TGCCGTGCCAAGTCGAAGGCGTCGTAACTTTGCAAGAAGTGCAGTTCAAACCGCGCAAGCAGCTCATCGTGCAGATTCAA
GACGATTCCGGCAGCGTGCTGTTTCTGCGCTTCATCCACTTCTACCCCAGCCATCAAAAACAAATGGCGCAAGGCAAACG
CATCCGCGCCGTGGGCGAAATCAAACACGGTTTTTACGGCGACGAAATGATCCACCCCAAAATCCGCGATGCCGACAACA
GCAGCCTCGCCGAAAGCCTCACCCCCGTTTACCCCACCGTCAACGGCCTCAACCAGCCCACCTTGCGCCGCATCGTTCAG
ACGGCCTTAGAAGCCCTGCCCCTGCACGACACCCTGCCCGACGAACTCTTAGGCCGTCTGAAACTGCCGCACTTGGCCGA
AAGCCTGCGCCTCCTGCACGCCCCGCCGCCCGATTACAGCATCCGCCAACTTTCAGACGGCACCCTCCCCGCATGGCAGC
GGCTCAAATTCGACGAACTGCTCGCCCAACAGCTTTCCATGCGGCTCGCACGGCAAAAACGCATCAGCGGGCAGGCCGCC
CCCCTGCACGGCACCGGCGAATGGTCGGGCAAACTGCTCAACGCCCTGCCCTTTTCCCTCACCCAAGCCCAACAGCGCGT
GCTGGCCGAAATCCGCGCCGACATGCGCCAAACCCACCCCATGCACCGCCTGCTGCAAGGCGACGTAGGCAGCGGCAAAA
CCATCGTTGCCGCCCTGGCCGCCCTCACCGCCATCGAAGCCGGCAGCCAAGTTGCCGTGATGGCGCCCACCGAAATCCTC
GCCGAACAGCACTACCTCAAATTCAAACAATGGTTCGAGCCGCTCGACCTCAGCGTTGCATGGCTTTCCGGCAGCCAGCG
CAAAAAAGCCAAAGAACAAAACAAAGCCGCCCTTTCAGACGGCCTCGCCCCCATCGCCGTCGGCACCCACGCCCTCTTTC
AAGAAGACGTACAGTTCCACAACCTCGGCCTCGTCATCGTCGACGAACAGCACCGCTTCGGCGTCGCCCAACGCCTCGCC
CTCAAAAACAAAGGCCAAGACGTACACCAGCTCATGATGTCCGCCACCCCCATCCCCCGCACGCTGGCCATGAGCTTTTT
CGCCGACCTCGACGTTTCCGTCATCGACGAACTGCCGCCCAACCGCACCCCCATCCAAACCCGCCTCGTCAACAGCCTGC
GCCGCCCCGAAGTCGAAGGCTTCGTACTCAACACCTGCCGCAAAGGGCGGCAGGTTTACTGGGTCTGCCCCCTCATCGAA
GAAAGCGAAACCCTGCAACTACAAACCGCCACCGAAACCCAAGCCGCCCTTCAAGCGGCCCTACCCGAACTCAGCATCGG
CCTCGTCCACGGCCGCATGAAAGCCACCGAAAAAGCCCAAGTGATGGCCGAATTTGCCGCAGGCCGTCTGAACGTACTCG
TCGCCACCACCGTTATCGAAGTCGGCGTAGACGTACCCAACGCCAGCCTCATGGTTATCGAACACGCCGAACGCATGGGC
TTGGCACAACTGCACCAACTGCGCGGACGCGTAGGCCGCGGAGCCGCCGCCAGCACCTGCGTCTTACTCTTCGCCGAACC
CCTGAGCGAGCTGGCCAAAGCCCGCCTCAAAGTCATCTACGAACACACCGACGGCTTCGAAATCGCCCGCCAAGACCTCA
ACATCCGCGGCCCCGGCGAATTTCTCGGCGCACGCCAAAGCGGCGTACCCATGCTCCGCTTCGCCAACCTCGAAGAAGAC
CTGCACCTTTTAGAAAAAGCCCGCGAAATCGCCCCCCAACTGATTGAAGAGAACCCCGACATCGTCGAAGCCCATCTCAA
CCGCTGGCTGGCGAGCAGGGAAAGTTATTTGGGAGTTTGA

Domains

Predicted by InterproScan.

RecG wedge domain (RecG_wedge)

(12-164)

Helicase conserved C-terminal domain (Helicase_C)

(467-574)

DEAD/DEAH box helicase (DEAD)

(263-418)

ATP-dependent DNA helicase RecG, domain 3, C-terminal (RecG_dom3_C)

(603-665)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recG Neisseria meningitidis strain C311

82.916

100

0.829

Multiple sequence alignment