Detailed information    

insolico Bioinformatically predicted

Overview

Name   recD   Type   Machinery gene
Locus tag   EL305_RS05000 Genome accession   NZ_LR134528
Coordinates   809219..810964 (-) Length   581 a.a.
NCBI ID   WP_002237002.1    Uniprot ID   -
Organism   Neisseria meningitidis strain NCTC12163     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 804219..815964
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EL305_RS04970 (NCTC12163_00832) - 804431..804865 (+) 435 WP_002222429.1 hypothetical protein -
  EL305_RS04975 (NCTC12163_00833) - 804924..805193 (-) 270 WP_002213508.1 HU family DNA-binding protein -
  EL305_RS04980 (NCTC12163_00834) lon 805375..807837 (-) 2463 WP_002237000.1 endopeptidase La -
  EL305_RS04990 - 807937..808113 (+) 177 WP_226893060.1 nitric oxide synthase -
  EL305_RS04995 (NCTC12163_00835) - 808088..809191 (+) 1104 WP_002237001.1 methyltransferase -
  EL305_RS05000 (NCTC12163_00836) recD 809219..810964 (-) 1746 WP_002237002.1 exodeoxyribonuclease V subunit alpha Machinery gene
  EL305_RS05005 (NCTC12163_00837) lolD 811032..811727 (-) 696 WP_002237003.1 lipoprotein-releasing ABC transporter ATP-binding protein LolD -
  EL305_RS05010 (NCTC12163_00838) - 811720..812967 (-) 1248 WP_002237004.1 lipoprotein-releasing ABC transporter permease subunit -
  EL305_RS05015 (NCTC12163_00839) - 813173..813451 (+) 279 WP_002213502.1 hypothetical protein -
  EL305_RS05020 (NCTC12163_00840) recR 813507..814124 (-) 618 WP_002237005.1 recombination mediator RecR -
  EL305_RS05025 (NCTC12163_00841) - 814191..815729 (-) 1539 WP_002237006.1 SurA N-terminal domain-containing protein -

Sequence

Protein


Download         Length: 581 a.a.        Molecular weight: 63016.57 Da        Isoelectric Point: 6.0394

>NTDB_id=1124024 EL305_RS05000 WP_002237002.1 809219..810964(-) (recD) [Neisseria meningitidis strain NCTC12163]
MERQTDEFAQAAARAAIRFLEHYAGSGDEVLANCTERLFQALQNGHSFIRLSGGEADALSALAPVVGTSAAPLILEGRRL
FLGRMWQLEYDLAAEIKRLAAAGTSAPDATGARQNLAKWFQGAGSEGQRDAAALALLQSFMVITGGPGTGKTTTVAKLLA
LICGEDENLPHIALAAPTGKAAAHMARALHRAINGFDAPEAVRRHLLKLEGQTVHRLLKLRPPKMQAAFDHIRPLPFDVL
IVDEASMLDTALMLQLLKAVKTGARVILLGDENQLPSVGIGAVLSVLSQKTVLDGETHQRLAGFLPEHGFSVSANPPVLA
HNTAHLSFSHRFGDNSGIGCLARAAVSGDEGAWALFDRFPDELEHSECSPNARVERLYRAHKAYWQAVKDGNIEAAYAGI
SDIVVLTAWRQDAEDFNEAYCSHVRRKMNIPEHQAYFAGEPIMIRQNDYALELFNGDIGLIMEDVGRQGSLAAYFADADG
FKKVAVSCLPEFEPAFAMTVHKSQGSEYREVWLLPPSAAPSDEGDDALSGLSKELLYTAITRAREKFVFFGGEETFRQAA
ATVKTRQTALGSMLERVFSQE

Nucleotide


Download         Length: 1746 bp        

>NTDB_id=1124024 EL305_RS05000 WP_002237002.1 809219..810964(-) (recD) [Neisseria meningitidis strain NCTC12163]
ATGGAACGGCAGACAGATGAATTTGCCCAAGCGGCGGCAAGGGCGGCAATCCGTTTTTTGGAACACTATGCGGGTTCTGG
CGACGAAGTGCTTGCAAACTGTACCGAACGCCTGTTTCAGGCATTGCAGAACGGTCATTCGTTTATCCGTTTGAGCGGTG
GCGAGGCTGATGCGCTGTCGGCACTCGCACCCGTGGTCGGAACATCCGCCGCGCCTTTGATTTTGGAAGGCAGAAGGCTG
TTTTTGGGCAGGATGTGGCAGTTGGAATACGATTTGGCTGCCGAGATAAAACGCTTGGCGGCAGCCGGCACATCCGCCCC
CGACGCGACAGGTGCGCGGCAAAACCTCGCAAAATGGTTTCAAGGCGCGGGCAGCGAAGGACAGCGCGATGCCGCCGCCT
TGGCACTGTTACAGTCTTTTATGGTGATTACCGGCGGGCCGGGAACGGGCAAAACGACAACGGTTGCCAAACTGCTGGCG
CTGATTTGCGGTGAAGACGAAAATCTTCCCCATATCGCGCTTGCCGCACCGACGGGCAAAGCGGCAGCACATATGGCGCG
CGCGCTGCACCGTGCAATCAACGGTTTTGACGCGCCGGAGGCCGTCCGCCGCCATTTGCTCAAACTGGAAGGGCAAACCG
TCCACCGATTGCTGAAGCTGCGCCCGCCCAAAATGCAGGCGGCGTTCGACCATATCCGTCCGCTGCCGTTCGATGTGCTG
ATTGTCGATGAAGCCTCCATGTTGGATACCGCATTGATGTTGCAACTTTTAAAAGCGGTCAAAACCGGCGCGCGCGTGAT
TCTGCTGGGGGATGAAAACCAGCTCCCGTCCGTCGGAATCGGGGCGGTGCTGTCCGTTTTGTCGCAAAAAACCGTTTTGG
ACGGAGAAACGCACCAAAGGCTGGCCGGCTTCCTTCCAGAACACGGTTTCAGCGTCAGCGCAAATCCGCCCGTGTTGGCG
CACAACACCGCCCATCTGTCGTTCAGCCACCGCTTCGGCGACAACAGCGGCATCGGCTGCCTTGCCCGTGCCGCCGTATC
GGGCGATGAGGGGGCGTGGGCATTGTTTGACCGGTTTCCGGATGAACTGGAACATTCGGAATGCAGTCCGAACGCTCGAG
TCGAAAGGTTGTACCGGGCGCACAAAGCCTATTGGCAGGCGGTAAAAGACGGCAATATCGAAGCCGCATACGCAGGCATC
TCGGATATCGTCGTCCTCACGGCGTGGCGGCAGGATGCGGAAGACTTCAACGAAGCCTATTGCAGCCATGTACGCCGCAA
AATGAACATACCGGAACATCAGGCCTATTTCGCCGGAGAACCGATTATGATCAGACAGAACGACTACGCGCTTGAACTGT
TCAACGGCGACATCGGACTGATTATGGAAGATGTCGGACGGCAGGGCAGCCTTGCCGCCTATTTTGCCGATGCGGACGGA
TTTAAAAAGGTAGCGGTAAGCTGCCTGCCCGAATTTGAACCCGCATTCGCCATGACCGTCCACAAAAGCCAAGGTTCGGA
ATATCGGGAAGTCTGGCTGCTGCCGCCTTCCGCCGCACCTTCGGACGAAGGGGACGATGCATTGTCCGGATTGAGTAAGG
AGCTGTTATATACCGCCATTACCCGCGCGAGGGAGAAGTTCGTATTCTTCGGCGGAGAAGAAACCTTCCGGCAAGCTGCC
GCCACTGTCAAAACGCGTCAGACGGCATTGGGCAGTATGCTCGAGCGGGTATTTTCACAAGAATAA

Domains

Predicted by InterproScan.

AAA domain (AAA_30)

(125-290)

UvrD-like helicase C-terminal domain (UvrD_C_2)

(494-548)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recD Neisseria gonorrhoeae strain FA1090

96.558

100

0.966

Multiple sequence alignment