Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   EL323_RS06975 Genome accession   NZ_LR134526
Coordinates   1190490..1191869 (-) Length   459 a.a.
NCBI ID   WP_080542289.1    Uniprot ID   -
Organism   Neisseria meningitidis strain NCTC10026     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1185490..1196869
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EL323_RS06955 (NCTC10026_01155) recB 1185598..1189212 (+) 3615 WP_080542288.1 exodeoxyribonuclease V subunit beta Machinery gene
  EL323_RS06960 (NCTC10026_01156) - 1189251..1189610 (+) 360 WP_002219522.1 rhodanese-like domain-containing protein -
  EL323_RS06965 (NCTC10026_01157) - 1189735..1190214 (+) 480 WP_002239618.1 DUF302 domain-containing protein -
  EL323_RS06975 (NCTC10026_01158) radA 1190490..1191869 (-) 1380 WP_080542289.1 DNA repair protein RadA Machinery gene
  EL323_RS06980 (NCTC10026_01159) hemE 1192058..1193122 (-) 1065 WP_080542290.1 uroporphyrinogen decarboxylase -
  EL323_RS06985 (NCTC10026_01160) - 1193197..1194414 (-) 1218 WP_002213996.1 heme biosynthesis protein HemY -
  EL323_RS06990 (NCTC10026_01161) - 1194411..1195745 (-) 1335 WP_172595932.1 uroporphyrinogen-III C-methyltransferase -
  EL323_RS06995 (NCTC10026_01162) - 1195757..1196521 (-) 765 WP_172595933.1 uroporphyrinogen-III synthase -

Sequence

Protein


Download         Length: 459 a.a.        Molecular weight: 49563.06 Da        Isoelectric Point: 7.3292

>NTDB_id=1123975 EL323_RS06975 WP_080542289.1 1190490..1191869(-) (radA) [Neisseria meningitidis strain NCTC10026]
MAKTLKTLYQCTECGGTSPKWQGKCPHCGEWNTLQESLAAPEPKNARFQSWAADTSTVQSLSSVTATEVPRNPTGMGELD
RVLGGGLVDGAVILLGGDPGIGKSTLLLQTIAKMAQSRKVLYVSGEESAQQVALRAQRLELPTDGVNLLAEIRMEAIQAA
LKQHQPEVVVIDSIQTMYSDQITSAPGSVSQVRECAAQLTRMAKQMGIAMILVGHVTKDGAIAGPRVLEHMVDTVLYFEG
DQHSNYRMIRAIKNRFGAANELGVFAMTENGLKGVSNPSAIFLASYRDDTPGSCVLVTQEGSRPLLVEIQALVDDAHGFT
PKRLTVGLEQNRLAMLLAVLNRHGGIACFDQDVFLNAVGGVKIGEPAADLAVILAMLSSFRNRPMPEKTVVFGEIGLSGE
VRPIARGQERLKEAEKLGFKRAIVPKANMPRNAKEFPNLKIYGVSSLQEAIDICRDSRE

Nucleotide


Download         Length: 1380 bp        

>NTDB_id=1123975 EL323_RS06975 WP_080542289.1 1190490..1191869(-) (radA) [Neisseria meningitidis strain NCTC10026]
ATGGCAAAAACGCTTAAAACCCTTTACCAATGCACCGAATGCGGCGGCACTTCCCCGAAATGGCAGGGCAAATGCCCGCA
TTGCGGCGAGTGGAACACACTTCAGGAAAGCTTGGCCGCGCCCGAGCCGAAAAACGCCCGCTTCCAATCTTGGGCGGCGG
ACACCTCGACCGTCCAATCCCTCTCCTCCGTGACCGCCACCGAAGTGCCGCGCAATCCGACCGGCATGGGCGAACTCGAC
CGCGTATTGGGCGGCGGTTTGGTCGATGGTGCGGTCATCCTGCTCGGCGGCGACCCCGGCATCGGCAAATCCACGCTGCT
GTTGCAAACCATCGCCAAAATGGCGCAAAGCCGTAAAGTGCTATACGTTTCCGGCGAAGAATCCGCCCAACAAGTCGCCC
TGCGCGCGCAGCGTTTGGAACTGCCGACCGACGGCGTAAACCTTCTTGCCGAAATCCGCATGGAAGCGATTCAGGCGGCC
TTGAAACAGCATCAGCCCGAAGTTGTCGTCATCGACTCTATCCAAACCATGTATTCCGACCAAATCACGTCCGCCCCCGG
CTCCGTGTCGCAGGTGCGCGAGTGTGCCGCCCAACTGACGCGCATGGCGAAACAGATGGGCATCGCCATGATACTGGTCG
GACACGTGACCAAAGACGGCGCGATTGCCGGCCCGCGCGTGCTGGAACACATGGTTGATACCGTGCTGTATTTCGAGGGC
GACCAACATTCCAACTACCGCATGATACGCGCCATCAAAAACCGTTTCGGCGCGGCAAACGAATTGGGCGTGTTTGCCAT
GACCGAAAACGGTTTAAAAGGCGTGTCCAACCCGTCCGCCATTTTCCTCGCCAGCTACCGCGACGACACGCCCGGCTCGT
GCGTTTTGGTTACACAGGAAGGCAGCCGCCCGCTTTTGGTCGAAATTCAGGCATTGGTCGATGACGCGCACGGCTTCACG
CCCAAACGCCTCACCGTCGGACTGGAACAAAACCGCCTCGCGATGCTGCTCGCCGTGTTAAACCGCCACGGCGGCATCGC
CTGTTTCGATCAGGATGTTTTTTTAAACGCCGTCGGCGGCGTGAAAATCGGCGAACCGGCGGCGGATTTGGCGGTTATCC
TCGCGATGCTCTCCAGCTTCCGCAACCGCCCGATGCCTGAAAAAACCGTGGTTTTCGGCGAAATCGGTTTGAGCGGCGAA
GTCCGTCCCATCGCACGCGGACAAGAGCGGCTCAAAGAAGCGGAAAAGCTCGGCTTTAAACGCGCCATCGTTCCCAAAGC
CAATATGCCGCGCAATGCCAAAGAGTTTCCGAACCTGAAAATCTACGGCGTTTCGAGTTTGCAGGAAGCCATCGATATTT
GCCGCGACAGCAGGGAATAA

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(366-428)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(9-36)

AAA domain (AAA_25)

(80-220)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

50.11

99.129

0.497
  radA Streptococcus pneumoniae Rx1

47.345

98.475

0.466
  radA Streptococcus pneumoniae D39

47.345

98.475

0.466
  radA Streptococcus pneumoniae R6

47.345

98.475

0.466
  radA Streptococcus pneumoniae TIGR4

47.345

98.475

0.466
  radA Streptococcus mitis SK321

47.228

98.257

0.464
  radA Streptococcus mitis NCTC 12261

47.228

98.257

0.464

Multiple sequence alignment