Detailed information    

insolico Bioinformatically predicted

Overview


Name   tpc   Type   Machinery gene
Locus tag   EL297_RS07550 Genome accession   NZ_LR134525
Coordinates   1265527..1266525 (+) Length   332 a.a.
NCBI ID   WP_002214152.1    Uniprot ID   X5F838
Organism   Neisseria meningitidis strain NCTC10025     
Function   DNA processing; DNA transport into the cytoplasm (predicted from homology)   
DNA processing DNA binding and uptake

Genomic Context


Location: 1260527..1271525
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EL297_RS07515 (NCTC10025_01253) - 1260760..1261449 (-) 690 WP_082308624.1 uracil-DNA glycosylase family protein -
  EL297_RS07525 (NCTC10025_01254) rsmA 1261646..1262425 (+) 780 WP_002229195.1 16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase RsmA -
  EL297_RS07530 (NCTC10025_01256) - 1262598..1263326 (+) 729 WP_002233691.1 amino acid ABC transporter ATP-binding protein -
  EL297_RS07535 (NCTC10025_01257) - 1263399..1263758 (+) 360 WP_002233690.1 hypothetical protein -
  EL297_RS07540 (NCTC10025_01258) - 1263763..1264209 (+) 447 WP_002246060.1 protein YgfX -
  EL297_RS07545 (NCTC10025_01259) folC 1264240..1265514 (+) 1275 WP_002246059.1 bifunctional tetrahydrofolate synthase/dihydrofolate synthase -
  EL297_RS07550 (NCTC10025_01260) tpc 1265527..1266525 (+) 999 WP_002214152.1 cell division protein FtsN Machinery gene
  EL297_RS07555 (NCTC10025_01261) - 1266518..1267015 (+) 498 WP_002237644.1 CvpA family protein -
  EL297_RS07560 (NCTC10025_01262) purF 1267224..1268768 (+) 1545 WP_002236814.1 amidophosphoribosyltransferase -
  EL297_RS07565 (NCTC10025_01263) greB 1268868..1269359 (+) 492 WP_002236813.1 transcription elongation factor GreB -
  EL297_RS07570 (NCTC10025_01264) - 1269418..1270044 (+) 627 WP_002246057.1 phosphoribosylanthranilate isomerase -

Sequence


Protein


Download         Length: 332 a.a.        Molecular weight: 35520.89 Da        Isoelectric Point: 10.1759

>NTDB_id=1123934 EL297_RS07550 WP_002214152.1 1265527..1266525(+) (tpc) [Neisseria meningitidis strain NCTC10025]
MSENKQNEVLSGYEQLKRRNRRRLVTASCLVAASCILLAAALSSGPAEQTAGETSGVENKAAGAAQTPALKSAADKPQDL
AGEDKPSAADSEISEPENVGAPLVLINDRLEDSNIKGLEASEKLQQAETAKTAPKQAKQRAAEKVPATADSTDTVAVEKP
KRTAETKPQKAERTAKAKPKAKETKTAEKVADKPKTAAEKTKPDTAKSDSAVKEAKKADKAESKKTAEKDRSDGKKHETA
QKTDKADKTKTAEKEKSGKKAAIQAGYAEKERALSLQRKMKAAGIDSTITEIMTDNGKVYRVKSSNYKNARDAERDLNKL
RVHGIAGQVTNE

Nucleotide


Download         Length: 999 bp        

>NTDB_id=1123934 EL297_RS07550 WP_002214152.1 1265527..1266525(+) (tpc) [Neisseria meningitidis strain NCTC10025]
ATGTCCGAAAACAAACAAAACGAAGTCCTGAGCGGTTACGAACAACTCAAACGGCGCAACCGCCGCCGCCTCGTAACGGC
AAGTTGCCTGGTTGCCGCCTCCTGCATCCTGCTGGCAGCCGCCCTCAGTTCCGGCCCTGCCGAACAGACTGCCGGCGAAA
CAAGCGGCGTAGAAAACAAAGCGGCAGGTGCGGCACAAACCCCTGCCTTGAAATCCGCCGCCGACAAACCGCAGGACTTG
GCAGGCGAAGACAAGCCTTCTGCCGCCGACAGCGAAATCAGCGAGCCTGAAAACGTAGGCGCGCCGCTGGTGCTGATTAA
CGACCGCCTCGAAGACAGCAACATCAAAGGTTTGGAAGCATCCGAGAAACTGCAACAGGCAGAAACCGCCAAAACCGCAC
CGAAGCAGGCAAAACAACGCGCTGCCGAAAAAGTGCCGGCAACTGCCGACAGTACGGATACGGTAGCGGTTGAAAAACCG
AAACGCACTGCCGAAACAAAACCGCAAAAAGCGGAACGCACTGCCAAAGCCAAGCCCAAAGCCAAAGAAACCAAAACCGC
CGAAAAAGTTGCCGACAAACCGAAAACTGCCGCCGAAAAAACCAAACCGGATACGGCAAAATCCGACAGCGCGGTAAAAG
AAGCGAAAAAAGCCGACAAGGCTGAAAGCAAAAAAACAGCCGAAAAAGACCGTTCGGACGGCAAAAAACACGAAACGGCA
CAAAAAACCGACAAAGCGGACAAGACCAAAACCGCCGAGAAGGAAAAATCCGGTAAAAAAGCCGCCATTCAGGCAGGTTA
TGCCGAAAAAGAACGCGCCTTAAGCCTCCAGCGCAAAATGAAGGCGGCGGGTATCGATTCGACCATCACCGAAATTATGA
CCGACAACGGCAAAGTTTACCGCGTCAAATCAAGCAACTATAAAAACGCAAGGGATGCCGAACGCGATTTGAACAAATTG
CGCGTACACGGTATCGCCGGTCAGGTAACGAATGAATAA

Domains


Predicted by InterproScan.

(259-330)


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure
  AlphaFold DB X5F838

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  tpc Neisseria gonorrhoeae MS11

89.884

100

0.937


Multiple sequence alignment