Detailed information    

insolico Bioinformatically predicted

Overview

Name   recD   Type   Machinery gene
Locus tag   EL297_RS04625 Genome accession   NZ_LR134525
Coordinates   822441..824186 (+) Length   581 a.a.
NCBI ID   WP_002249367.1    Uniprot ID   -
Organism   Neisseria meningitidis strain NCTC10025     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 817441..829186
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EL297_RS04600 (NCTC10025_00769) - 817678..819216 (+) 1539 WP_002241585.1 SurA N-terminal domain-containing protein -
  EL297_RS04605 (NCTC10025_00770) recR 819283..819900 (+) 618 WP_002217147.1 recombination mediator RecR -
  EL297_RS04610 (NCTC10025_00771) - 819956..820234 (-) 279 WP_002213502.1 hypothetical protein -
  EL297_RS04615 (NCTC10025_00772) - 820438..821685 (+) 1248 WP_002217148.1 lipoprotein-releasing ABC transporter permease subunit -
  EL297_RS04620 (NCTC10025_00773) lolD 821678..822373 (+) 696 WP_002217149.1 lipoprotein-releasing ABC transporter ATP-binding protein LolD -
  EL297_RS04625 (NCTC10025_00774) recD 822441..824186 (+) 1746 WP_002249367.1 exodeoxyribonuclease V subunit alpha Machinery gene
  EL297_RS04630 (NCTC10025_00775) - 824214..825317 (-) 1104 WP_002240523.1 methyltransferase -
  EL297_RS04635 - 825292..825468 (-) 177 WP_226893060.1 nitric oxide synthase -
  EL297_RS04645 (NCTC10025_00776) lon 825568..828018 (+) 2451 WP_002222428.1 endopeptidase La -
  EL297_RS04650 (NCTC10025_00777) - 828200..828469 (+) 270 WP_002213508.1 HU family DNA-binding protein -
  EL297_RS04655 (NCTC10025_00778) - 828528..828962 (-) 435 WP_002222429.1 hypothetical protein -

Sequence

Protein


Download         Length: 581 a.a.        Molecular weight: 63027.58 Da        Isoelectric Point: 5.5000

>NTDB_id=1123923 EL297_RS04625 WP_002249367.1 822441..824186(+) (recD) [Neisseria meningitidis strain NCTC10025]
MERQTDEFAQAAARAAIWFLARYAGSGDEVLANCTERLFQALQNGHSFIRLSGGEADALSALAPVVGTSAAPLILEGRRL
FLGRMWQLEYDLAAEIKRLAAADTSAPDAAGARQNLAKWFQGTGSEGQRDAAALALLQSFMVITGGPGTGKTTTVAKLLA
LICGEDENLPNIALAAPTGKAAAHMARALHRAINGFDAPEAVRRHLLKLEGQTVHRLLKLRPPKMQAAFNPVYPLPFDVL
VIDEASMLDTVLMLQLLKAVKTGARVILLGDENQLPSVGIGDVLSVLSQKTVLDGETHQRLAGFLPEHGFSVSANPPLLA
QNTAHLSFSHRFGDNSGIGCLARAAVSGDEGAWALFDRFPDELEHSECSPNARVERLYRAHKAYWQAVKDGNIEAAYAGI
SDIVVLAAWRQDAEDFNEAYCSHVRRKMNIPEHQAYFAGEPIMIRQNDYALELFNGDIGLIMEDVGRQGSLAAYFADADG
FKKVAVSCLPDFEPAFAMTVHKSQGSEYREVWLLPPSAAPSDEGDDALSGLSKELLYTAITRAREKFVFFGGEETFRQAA
ATVKTRQTALGSMLERVFSQE

Nucleotide


Download         Length: 1746 bp        

>NTDB_id=1123923 EL297_RS04625 WP_002249367.1 822441..824186(+) (recD) [Neisseria meningitidis strain NCTC10025]
ATGGAACGGCAGACAGATGAATTTGCCCAAGCGGCGGCAAGGGCGGCAATCTGGTTTTTGGCACGCTATGCGGGTTCCGG
CGACGAAGTGCTTGCAAACTGCACCGAACGCCTGTTTCAGGCATTGCAAAACGGTCATTCGTTTATCCGTTTGAGCGGTG
GCGAGGCTGACGCGCTGTCGGCACTCGCACCCGTGGTCGGAACATCCGCCGCGCCTTTGATTTTGGAAGGCAGAAGGCTG
TTTTTGGGCAGGATGTGGCAGTTGGAATACGATTTGGCTGCCGAGATAAAACGCTTGGCGGCAGCCGACACGTCCGCCCC
CGACGCGGCAGGCGCGAGGCAAAACCTCGCAAAATGGTTTCAAGGCACGGGCAGCGAAGGGCAGCGCGATGCCGCCGCCT
TGGCACTGTTGCAGTCTTTTATGGTGATTACCGGCGGGCCGGGAACGGGCAAAACGACAACGGTTGCCAAACTGCTGGCG
CTGATTTGCGGTGAAGACGAAAATCTTCCCAACATCGCGCTTGCCGCACCGACGGGCAAAGCGGCGGCACATATGGCGCG
CGCGCTGCACCGTGCAATCAACGGTTTTGACGCGCCGGAGGCCGTCCGCCGCCATTTGCTCAAACTGGAAGGGCAAACCG
TCCACCGACTGCTGAAGCTGCGCCCGCCCAAAATGCAGGCGGCGTTCAACCCTGTTTACCCGCTGCCGTTTGACGTATTG
GTTATCGATGAAGCCTCTATGCTGGATACGGTATTGATGTTGCAACTTTTAAAAGCGGTCAAAACCGGCGCGCGCGTGAT
TCTGCTGGGCGATGAAAACCAGCTCCCGTCCGTCGGAATCGGGGACGTGCTGTCCGTCCTGTCGCAAAAAACCGTTTTGG
ACGGAGAAACGCACCAAAGGCTGGCCGGCTTCCTTCCGGAACACGGTTTCAGCGTCAGTGCAAATCCGCCCTTGTTGGCG
CAAAACACCGCCCATCTGTCGTTCAGCCACCGCTTCGGCGACAACAGCGGCATCGGCTGCCTTGCCCGTGCCGCCGTATC
GGGCGATGAGGGGGCGTGGGCATTGTTTGACCGGTTTCCGGACGAACTGGAACATTCGGAATGCAGTCCGAACGCTCGAG
TCGAAAGGTTGTACCGGGCGCACAAAGCCTATTGGCAGGCGGTAAAAGACGGCAATATCGAAGCCGCATACGCAGGCATC
TCGGATATCGTGGTCCTGGCAGCTTGGCGGCAGGATGCGGAAGACTTCAACGAAGCCTATTGCAGCCATGTACGCCGCAA
AATGAACATACCGGAACATCAGGCCTATTTCGCCGGAGAACCGATTATGATCAGACAGAACGACTACGCGCTTGAACTGT
TCAACGGCGACATCGGATTGATTATGGAAGATGTCGGACGGCAGGGCAGCCTTGCCGCCTATTTTGCCGATGCGGACGGA
TTTAAAAAGGTAGCGGTAAGCTGCCTGCCCGATTTCGAACCCGCATTCGCCATGACCGTCCACAAAAGCCAAGGTTCGGA
ATATCGGGAAGTCTGGCTGCTGCCGCCTTCCGCCGCACCTTCGGACGAAGGGGACGATGCATTGTCCGGATTGAGTAAGG
AGCTGTTATATACCGCCATTACCCGCGCGAGGGAGAAGTTCGTATTCTTCGGCGGAGAAGAAACCTTCCGGCAAGCTGCC
GCCACTGTCAAAACGCGTCAGACGGCATTGGGCAGTATGCTCGAGCGGGTATTTTCACAAGAATAA

Domains

Predicted by InterproScan.

AAA domain (AAA_30)

(125-290)

UvrD-like helicase C-terminal domain (UvrD_C_2)

(494-548)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recD Neisseria gonorrhoeae strain FA1090

94.664

100

0.947

Multiple sequence alignment