Detailed information    

insolico Bioinformatically predicted

Overview

Name   scnR   Type   Regulator
Locus tag   EL294_RS01070 Genome accession   NZ_LR134523
Coordinates   226999..227688 (-) Length   229 a.a.
NCBI ID   WP_126464690.1    Uniprot ID   A0A3S5F7S7
Organism   Aedoeadaptatus ivorii strain NCTC13079     
Function   regulate comX expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 221999..232688
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EL294_RS01045 (NCTC13079_00211) - 222597..223523 (-) 927 WP_126464687.1 IS3 family transposase -
  EL294_RS01050 (NCTC13079_00212) - 223433..223732 (-) 300 WP_126464664.1 transposase -
  EL294_RS01055 (NCTC13079_00213) - 223865..224566 (+) 702 WP_197721094.1 endonuclease III domain-containing protein -
  EL294_RS01060 (NCTC13079_00214) - 224730..225638 (+) 909 WP_126464688.1 hypothetical protein -
  EL294_RS01065 (NCTC13079_00215) - 225698..227002 (-) 1305 WP_126464689.1 sensor histidine kinase KdpD -
  EL294_RS01070 (NCTC13079_00216) scnR 226999..227688 (-) 690 WP_126464690.1 response regulator transcription factor Regulator
  EL294_RS01075 (NCTC13079_00217) - 227820..228716 (+) 897 WP_232006511.1 ABC transporter ATP-binding protein -
  EL294_RS01080 (NCTC13079_00218) - 228725..229468 (+) 744 WP_126464692.1 ABC transporter permease -
  EL294_RS01085 (NCTC13079_00219) - 229465..230199 (+) 735 WP_126464693.1 ABC transporter permease -
  EL294_RS07985 (NCTC13079_00220) - 230272..230601 (-) 330 WP_232006485.1 glutathione S-transferase family protein -
  EL294_RS07990 (NCTC13079_00221) - 230598..230831 (-) 234 WP_232006486.1 glutathione S-transferase N-terminal domain-containing protein -
  EL294_RS01095 (NCTC13079_00222) - 230996..231532 (+) 537 WP_126464694.1 flavodoxin domain-containing protein -
  EL294_RS01100 (NCTC13079_00223) - 231547..232107 (+) 561 WP_164715168.1 TetR/AcrR family transcriptional regulator -

Sequence

Protein


Download         Length: 229 a.a.        Molecular weight: 26002.71 Da        Isoelectric Point: 6.0900

>NTDB_id=1123888 EL294_RS01070 WP_126464690.1 226999..227688(-) (scnR) [Aedoeadaptatus ivorii strain NCTC13079]
MKTHERTILITDDDAAILDFVESVLREDGFEHISRAKNQQEALDILAREDIHMAILDIILPDGSGFAIIQQIRKSSNMPV
LFLSAVSDVDKQYSGFDLGADDYIVKPFRPKDLLLRTKAILHRAYPESEVVALAASTVDFDRATVRNAKGEVPLTAKEYH
ILHLLYENKNHIVTIDGILSAVWGEDCYGYENTLMAHIRKIRQKIEQDPSNPESLRTYRGLGYKLRVRP

Nucleotide


Download         Length: 690 bp        

>NTDB_id=1123888 EL294_RS01070 WP_126464690.1 226999..227688(-) (scnR) [Aedoeadaptatus ivorii strain NCTC13079]
ATGAAAACACACGAGCGAACGATATTAATTACAGACGACGATGCGGCCATTTTGGACTTTGTCGAAAGCGTGCTGAGAGA
AGACGGCTTCGAACATATTTCCCGCGCAAAGAACCAGCAAGAGGCCCTCGACATACTCGCCCGCGAGGACATCCATATGG
CGATCCTCGACATTATTTTGCCTGACGGGAGCGGCTTTGCGATCATTCAACAGATCCGTAAGTCTTCGAATATGCCGGTG
CTCTTTCTCTCGGCGGTCTCGGATGTGGACAAGCAGTACAGCGGCTTCGATCTAGGGGCTGACGACTATATCGTAAAGCC
CTTTCGCCCCAAAGACTTACTGCTGCGCACCAAAGCGATCCTGCACCGCGCGTATCCCGAAAGCGAGGTTGTGGCCCTCG
CCGCTTCCACCGTCGACTTCGACCGCGCTACAGTACGCAATGCCAAAGGCGAGGTGCCGCTGACTGCCAAGGAATACCAC
ATCTTGCACTTGCTCTACGAAAACAAAAACCATATCGTCACCATCGACGGCATCCTCTCTGCCGTATGGGGCGAGGATTG
CTACGGCTACGAAAACACCCTGATGGCACATATTCGCAAGATTCGGCAAAAAATCGAACAGGACCCGTCGAATCCCGAAA
GCCTCCGTACCTATCGGGGACTGGGCTATAAACTGCGGGTACGGCCGTGA

Domains

Predicted by InterproScan.

Transcriptional regulatory protein, C terminal (Trans_reg_C)

(151-225)

Response regulator receiver domain (Response_reg)

(8-116)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A3S5F7S7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  scnR Streptococcus mutans UA159

55.702

99.563

0.555

Multiple sequence alignment