Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEC/comE3   Type   Machinery gene
Locus tag   EL264_RS07600 Genome accession   NZ_LR134519
Coordinates   1548303..1549616 (-) Length   437 a.a.
NCBI ID   WP_164757163.1    Uniprot ID   -
Organism   Helicobacter pylori strain NCTC12823     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1543303..1554616
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EL264_RS07570 (NCTC12823_01507) nadC 1543768..1544589 (-) 822 WP_126474775.1 carboxylating nicotinate-nucleotide diphosphorylase -
  EL264_RS07575 (NCTC12823_01508) nadA 1544589..1545599 (-) 1011 WP_126474776.1 quinolinate synthase NadA -
  EL264_RS07580 (NCTC12823_01509) - 1545589..1546392 (-) 804 WP_126474777.1 phosphatidylserine decarboxylase -
  EL264_RS07585 (NCTC12823_01510) - 1546386..1546892 (-) 507 WP_000953090.1 DUF6115 domain-containing protein -
  EL264_RS07590 (NCTC12823_01511) - 1546905..1547399 (-) 495 WP_197720763.1 hypothetical protein -
  EL264_RS07595 (NCTC12823_01512) mqnP 1547392..1548276 (-) 885 WP_126474779.1 menaquinone biosynthesis prenyltransferase MqnP -
  EL264_RS07600 (NCTC12823_01513) comEC/comE3 1548303..1549616 (-) 1314 WP_164757163.1 ComEC/Rec2 family competence protein Machinery gene
  EL264_RS07605 (NCTC12823_01514) - 1549613..1551079 (-) 1467 WP_126474780.1 replicative DNA helicase -
  EL264_RS07610 (NCTC12823_01515) - 1551090..1552490 (-) 1401 WP_126474781.1 NAD(P)H-hydrate dehydratase -
  EL264_RS07615 (NCTC12823_01516) crdS 1552493..1553695 (-) 1203 WP_126474782.1 copper-sensing histidine kinase CrdS -
  EL264_RS07620 (NCTC12823_01517) crdR 1553661..1554302 (-) 642 WP_126474783.1 copper response regulator transcription factor CrdR -

Sequence

Protein


Download         Length: 437 a.a.        Molecular weight: 50322.28 Da        Isoelectric Point: 9.8459

>NTDB_id=1123790 EL264_RS07600 WP_164757163.1 1548303..1549616(-) (comEC/comE3) [Helicobacter pylori strain NCTC12823]
MKDKTFQGAFELLSTPKEYLWCGVVLSLLLAINLYLEYLNYQKLDFSKPTSLNAQILLQYPKTKDQKTYFVLKLQSKNMI
FYTTIKEPLKNLQYRHAQFFGKIKPCSFLESLKSCFFQTYSFSLMRKQDFKSHWRHFIDSAHSSALVGNLYRALFIGDSL
NKDLRDRANALGINHLLAISGFHLGILSASVYFLFSLFYTPLQKRYFPYRNAFYDIGVLVWVFLLGYLLLLDFLPSFFRA
FLMGLLGFLACFFGVRLLSFKLLVLACCIAIALLPKLLFSVGFLLSVCGVWYIFLFLKHTQFFFKDSSFLKRSFQAIALS
ALVFLNMLIIAHAFFPMFSPYQLFSIPLGLIFIVFFPLSLFLHAVGLGSLLDHILSMPLTIPTISIPSPLWLLGVHLFLT
ILSARFFKVYLSMNVLSAGFFLYCCYQYIIMPSLIVG

Nucleotide


Download         Length: 1314 bp        

>NTDB_id=1123790 EL264_RS07600 WP_164757163.1 1548303..1549616(-) (comEC/comE3) [Helicobacter pylori strain NCTC12823]
TTGAAAGATAAAACTTTTCAGGGGGCGTTTGAACTTCTTTCAACCCCCAAAGAATACTTATGGTGTGGGGTTGTTTTAAG
CCTTTTATTGGCGATTAACCTTTATTTAGAATACTTGAATTACCAAAAGCTTGATTTTTCAAAACCTACAAGCTTGAACG
CTCAAATCTTGTTGCAATACCCTAAAACTAAAGATCAAAAAACCTATTTTGTTTTAAAGCTCCAATCAAAAAACATGATC
TTTTACACCACCATTAAAGAGCCTTTAAAAAATCTCCAATACCGCCACGCGCAATTTTTTGGCAAGATCAAGCCTTGCTC
GTTCTTAGAGTCTCTAAAATCATGCTTTTTTCAAACTTATTCTTTTTCTTTAATGCGAAAACAAGATTTCAAATCGCATT
GGCGCCATTTCATTGACAGCGCTCATTCAAGCGCTTTAGTGGGTAATTTGTATCGCGCGTTATTTATAGGGGATAGCTTG
AATAAAGACTTAAGAGACAGGGCTAACGCGCTAGGGATCAACCACTTACTAGCCATTAGCGGGTTCCATTTAGGGATTTT
GAGCGCGAGCGTGTATTTTCTTTTCTCTCTTTTTTATACCCCCTTACAAAAACGCTATTTCCCTTATAGGAACGCTTTTT
ATGATATAGGGGTTTTGGTGTGGGTTTTTTTGCTAGGGTATTTATTACTATTAGATTTTTTACCCTCTTTTTTCAGGGCG
TTTTTAATGGGCTTATTAGGGTTTTTGGCATGCTTTTTTGGGGTAAGGCTTTTGAGTTTTAAACTTTTGGTTTTAGCATG
CTGTATCGCCATAGCGTTACTCCCTAAATTGCTTTTTAGCGTGGGGTTTTTGCTTTCTGTTTGTGGGGTGTGGTATATCT
TTTTATTTTTAAAACACACTCAATTTTTTTTTAAAGATTCTTCTTTTTTAAAGCGATCGTTTCAAGCGATCGCTTTAAGC
GCACTGGTGTTTTTGAACATGCTCATTATCGCACATGCCTTTTTCCCTATGTTTTCGCCCTACCAGCTCTTTAGCATTCC
TTTAGGCTTGATTTTTATCGTGTTTTTCCCTTTGAGTTTGTTCTTGCATGCGGTGGGTTTGGGGTCTTTGTTGGATCATA
TTCTAAGCATGCCTTTAACCATCCCTACGATTTCAATCCCTTCGCCTTTATGGCTTTTGGGGGTGCATTTATTTTTAACG
ATTTTAAGCGCGCGTTTTTTTAAAGTTTATTTAAGCATGAATGTTTTAAGCGCGGGCTTTTTCTTGTATTGTTGCTATCA
ATATATTATAATGCCTAGCTTAATTGTAGGTTAG

Domains

Predicted by InterproScan.

Competence protein (Competence)

(159-379)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEC/comE3 Helicobacter pylori 26695

95.881

100

0.959

Multiple sequence alignment