Detailed information
Bioinformatically predicted
Overview
| Name | comFC | Type | Machinery gene |
| Locus tag | EL264_RS00265 | Genome accession | NZ_LR134519 |
| Coordinates | 60551..61126 (+) | Length | 191 a.a. |
| NCBI ID | WP_126473798.1 | Uniprot ID | - |
| Organism | Helicobacter pylori strain NCTC12823 | ||
| Function | ssDNA transport into the cell (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 55551..66126
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| EL264_RS00240 (NCTC12823_00050) | uvrD | 56242..58287 (+) | 2046 | WP_197720770.1 | DNA helicase UvrD | - |
| EL264_RS00245 (NCTC12823_00051) | flgA | 58308..58940 (+) | 633 | WP_414973776.1 | flagellar basal body P-ring formation chaperone FlgA | - |
| EL264_RS00250 (NCTC12823_00052) | - | 58950..59513 (+) | 564 | WP_000780113.1 | UbiX family flavin prenyltransferase | - |
| EL264_RS00255 (NCTC12823_00053) | coaD | 59513..59986 (+) | 474 | WP_033589676.1 | pantetheine-phosphate adenylyltransferase | - |
| EL264_RS00260 (NCTC12823_00054) | tmk | 59988..60563 (+) | 576 | WP_126473796.1 | dTMP kinase | - |
| EL264_RS00265 (NCTC12823_00055) | comFC | 60551..61126 (+) | 576 | WP_126473798.1 | ComF family protein | Machinery gene |
| EL264_RS00270 (NCTC12823_00056) | - | 61159..63198 (+) | 2040 | WP_126473800.1 | class I SAM-dependent DNA methyltransferase | - |
| EL264_RS00275 (NCTC12823_00057) | - | 63195..63864 (+) | 670 | Protein_55 | restriction endonuclease subunit S | - |
| EL264_RS00280 (NCTC12823_00058) | - | 63856..64419 (+) | 564 | WP_197720764.1 | N-6 DNA methylase | - |
Sequence
Protein
Download Length: 191 a.a. Molecular weight: 21305.83 Da Isoelectric Point: 8.6728
>NTDB_id=1123773 EL264_RS00265 WP_126473798.1 60551..61126(+) (comFC) [Helicobacter pylori strain NCTC12823]
MRCLTCLKLSFKPLCPNCLNDLPLSLKVRVLEGVSVYSFYAYSEIEELIKSKYALIGSRILPLLSQKAGAEFVKILQEQG
LNIPLYGIAIDDKIKSFYSHSAALLKGFCQGNLKATYGRLRANNAVSYAGKSLEFRTNNPRDFTFKGDENLDYFLLDDII
TTGTTLKEALKYLKALNIKAHFAIALCSADE
MRCLTCLKLSFKPLCPNCLNDLPLSLKVRVLEGVSVYSFYAYSEIEELIKSKYALIGSRILPLLSQKAGAEFVKILQEQG
LNIPLYGIAIDDKIKSFYSHSAALLKGFCQGNLKATYGRLRANNAVSYAGKSLEFRTNNPRDFTFKGDENLDYFLLDDII
TTGTTLKEALKYLKALNIKAHFAIALCSADE
Nucleotide
Download Length: 576 bp
>NTDB_id=1123773 EL264_RS00265 WP_126473798.1 60551..61126(+) (comFC) [Helicobacter pylori strain NCTC12823]
ATGCGTTGTTTAACTTGTTTGAAGCTTTCTTTTAAGCCCCTTTGCCCAAATTGCCTAAACGATCTGCCATTAAGCTTAAA
GGTAAGGGTTTTAGAGGGCGTGAGCGTGTATAGTTTTTACGCTTATAGCGAAATAGAAGAGCTCATTAAAAGCAAATACG
CGCTGATTGGCTCTCGCATTTTACCCTTGCTTTCTCAAAAAGCCGGTGCGGAATTTGTAAAAATCTTACAAGAACAAGGC
TTGAATATCCCCCTTTATGGCATCGCCATTGATGATAAAATCAAATCCTTTTACTCGCATTCAGCCGCGCTTTTAAAAGG
CTTTTGTCAAGGGAATTTAAAAGCCACTTACGGGCGTTTAAGGGCTAATAATGCTGTTTCGTATGCCGGGAAAAGCCTGG
AATTTCGCACCAACAACCCACGGGATTTCACTTTCAAAGGCGATGAGAATTTAGATTATTTTTTATTAGATGATATTATC
ACCACCGGCACCACCCTAAAAGAAGCTCTAAAATACCTTAAAGCTTTAAACATTAAAGCGCACTTTGCGATCGCGCTTTG
CAGCGCGGATGAATGA
ATGCGTTGTTTAACTTGTTTGAAGCTTTCTTTTAAGCCCCTTTGCCCAAATTGCCTAAACGATCTGCCATTAAGCTTAAA
GGTAAGGGTTTTAGAGGGCGTGAGCGTGTATAGTTTTTACGCTTATAGCGAAATAGAAGAGCTCATTAAAAGCAAATACG
CGCTGATTGGCTCTCGCATTTTACCCTTGCTTTCTCAAAAAGCCGGTGCGGAATTTGTAAAAATCTTACAAGAACAAGGC
TTGAATATCCCCCTTTATGGCATCGCCATTGATGATAAAATCAAATCCTTTTACTCGCATTCAGCCGCGCTTTTAAAAGG
CTTTTGTCAAGGGAATTTAAAAGCCACTTACGGGCGTTTAAGGGCTAATAATGCTGTTTCGTATGCCGGGAAAAGCCTGG
AATTTCGCACCAACAACCCACGGGATTTCACTTTCAAAGGCGATGAGAATTTAGATTATTTTTTATTAGATGATATTATC
ACCACCGGCACCACCCTAAAAGAAGCTCTAAAATACCTTAAAGCTTTAAACATTAAAGCGCACTTTGCGATCGCGCTTTG
CAGCGCGGATGAATGA
Domains
No domain identified.
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comFC | Helicobacter pylori 26695 |
96.859 |
100 |
0.969 |