Detailed information    

insolico Bioinformatically predicted

Overview

Name   uvrC   Type   Machinery gene
Locus tag   EL253_RS01635 Genome accession   NZ_LR134518
Coordinates   344543..346201 (-) Length   552 a.a.
NCBI ID   WP_104724336.1    Uniprot ID   -
Organism   Helicobacter cholecystus strain NCTC13205     
Function   integration of short DNA fragment (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 339543..351201
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EL253_RS01605 (NCTC13205_00327) mog 339586..340113 (+) 528 WP_104724348.1 molybdopterin adenylyltransferase -
  EL253_RS01610 (NCTC13205_00328) moaC 340124..340603 (+) 480 WP_104724346.1 cyclic pyranopterin monophosphate synthase MoaC -
  EL253_RS01615 (NCTC13205_00329) - 340600..340848 (+) 249 WP_104724344.1 HTH domain-containing protein -
  EL253_RS01620 (NCTC13205_00330) - 340976..341536 (-) 561 WP_104724342.1 DedA family protein -
  EL253_RS01625 (NCTC13205_00331) - 341546..343687 (-) 2142 WP_104724340.1 TonB-dependent receptor -
  EL253_RS01630 (NCTC13205_00332) - 343812..344546 (+) 735 WP_104724338.1 HugZ family heme oxygenase -
  EL253_RS01635 (NCTC13205_00333) uvrC 344543..346201 (-) 1659 WP_104724336.1 excinuclease ABC subunit UvrC Machinery gene
  EL253_RS01640 (NCTC13205_00334) - 346180..346683 (-) 504 WP_104724334.1 hypothetical protein -
  EL253_RS01645 (NCTC13205_00335) - 346782..348230 (+) 1449 WP_104724641.1 L-aspartate oxidase -
  EL253_RS01650 (NCTC13205_00336) - 348214..348726 (-) 513 WP_158653681.1 YhcH/YjgK/YiaL family protein -
  EL253_RS01655 (NCTC13205_00337) - 348853..349344 (+) 492 WP_104724330.1 ferritin -
  EL253_RS01660 (NCTC13205_00338) ribA 349456..350046 (+) 591 WP_104724328.1 GTP cyclohydrolase II -

Sequence

Protein


Download         Length: 552 a.a.        Molecular weight: 64211.45 Da        Isoelectric Point: 9.6160

>NTDB_id=1123765 EL253_RS01635 WP_104724336.1 344543..346201(-) (uvrC) [Helicobacter cholecystus strain NCTC13205]
MSILQTLKTLPKQSGIYQYYDEKGKLLYVGKAKNLYKRVRSYFKVTDASPSSNLSPRIHNMVLKIASIQTIVVNNEIDAL
ILENSLIKQLKPRYNILLRDDKTYPYIYIDTTSAFPRPKITRIKRKSSIYFGPFCTGSKEVLESLYDIVPLVQKEGCLRE
KKACLFYQIQKCKAPCEGKITQEQYQSLLNLAISYLKDKKSLLASLEDKMLKLAEQERFEEAITLRERIKKISSLTMQSS
IDLHSPDANWDIFAIEHNQDFALLLKLYMREGRIISSDFEKIPLHSHILDWEQKLSLYQQALINHYQKELPIPPKGLILP
AEIKEGISEYSQWLADKKIKLYFPQKGNKKALLDLAYKNAREILKIQDCEYEIKFALKELFVLEYLPQRIEVFDTSHHSG
ENNVGGMIVYDNGEFVKSSYRHYHLQGSDEYSQMREMLIRRAKNFDQISPPDLWLLDGGKAQIHIAQEVLESAGVNIGVI
AISKEKLDHKAHRAKGRARDILRAYIDEECKEFRLLPSDKRLHFFQKLRDEAHRFAITFHRKSKTKSLIPQN

Nucleotide


Download         Length: 1659 bp        

>NTDB_id=1123765 EL253_RS01635 WP_104724336.1 344543..346201(-) (uvrC) [Helicobacter cholecystus strain NCTC13205]
ATGTCAATCCTCCAAACTCTAAAAACACTTCCTAAGCAAAGCGGAATTTATCAATATTATGATGAGAAAGGAAAGTTGCT
TTATGTAGGAAAAGCAAAAAATTTATACAAACGAGTAAGAAGTTATTTTAAAGTTACAGATGCAAGCCCTAGCTCTAATC
TTAGTCCAAGAATTCATAATATGGTCTTAAAAATTGCAAGTATTCAAACAATTGTCGTAAACAATGAAATAGATGCACTG
ATACTGGAAAATTCTTTGATTAAGCAACTTAAACCTCGTTATAACATTTTACTTAGAGATGATAAAACCTATCCTTACAT
TTATATTGATACAACCTCAGCATTTCCACGTCCTAAAATTACAAGAATTAAGCGAAAATCAAGCATATATTTTGGACCAT
TTTGCACTGGGAGTAAGGAAGTGCTAGAAAGTCTTTATGATATCGTGCCACTTGTGCAAAAAGAAGGATGCTTAAGAGAG
AAAAAGGCCTGTTTATTCTATCAGATTCAAAAATGTAAAGCCCCTTGTGAGGGAAAAATTACCCAAGAGCAATACCAAAG
TCTTCTTAACCTTGCAATTTCTTATCTTAAAGATAAGAAATCTCTTTTGGCAAGTCTTGAAGATAAAATGCTTAAACTTG
CAGAACAAGAGAGATTTGAGGAAGCTATTACTTTAAGAGAAAGAATCAAAAAAATCTCCTCACTGACAATGCAATCAAGT
ATTGATTTACATTCTCCTGATGCGAATTGGGATATTTTTGCCATTGAACACAATCAAGATTTTGCCCTTCTACTTAAACT
CTATATGAGAGAGGGAAGAATTATTTCAAGTGATTTTGAAAAAATTCCCTTGCATTCTCACATTCTTGATTGGGAGCAAA
AACTCTCACTCTACCAACAAGCTTTGATTAATCACTATCAAAAAGAACTCCCCATTCCTCCAAAAGGATTGATTTTACCA
GCAGAAATTAAGGAAGGAATAAGTGAATATTCCCAATGGCTTGCAGATAAAAAAATCAAACTCTACTTCCCCCAAAAAGG
TAATAAAAAAGCACTGCTTGATCTTGCTTATAAAAATGCAAGGGAGATTTTAAAAATTCAAGATTGTGAATATGAGATTA
AATTTGCCCTTAAAGAACTCTTTGTGCTTGAATATCTTCCGCAACGTATTGAAGTCTTTGATACAAGCCATCACTCAGGA
GAGAATAATGTGGGAGGAATGATTGTTTATGATAATGGTGAGTTTGTTAAAAGCTCTTATAGACACTATCATTTGCAAGG
GAGTGATGAATACTCTCAGATGCGAGAAATGCTTATCCGTAGAGCCAAAAATTTTGATCAAATTTCTCCTCCAGATTTGT
GGCTTTTGGATGGGGGAAAAGCGCAAATTCATATTGCACAAGAGGTTTTAGAAAGTGCAGGGGTGAATATTGGAGTTATT
GCAATTTCAAAAGAAAAATTAGATCATAAAGCCCATAGAGCTAAGGGGAGAGCAAGAGATATCTTAAGAGCATATATAGA
TGAAGAATGTAAAGAGTTTAGGCTTTTACCAAGTGATAAACGTTTGCATTTTTTTCAAAAGCTCAGAGATGAGGCTCATC
GCTTTGCAATTACTTTCCATAGAAAAAGCAAAACAAAAAGCCTTATCCCCCAAAATTAA

Domains

Predicted by InterproScan.

UvrC RNAse H endonuclease domain (UvrC_RNaseH_dom)

(379-537)

UvrB/uvrC motif (UVR)

(200-233)

GIY-YIG catalytic domain (GIY-YIG)

(14-95)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  uvrC Helicobacter pylori 26695

50.811

100

0.511

Multiple sequence alignment