Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEC/comE3   Type   Machinery gene
Locus tag   EL256_RS07525 Genome accession   NZ_LR134517
Coordinates   1535016..1536329 (-) Length   437 a.a.
NCBI ID   WP_164758957.1    Uniprot ID   -
Organism   Helicobacter pylori strain NCTC13345     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1530016..1541329
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EL256_RS07495 (NCTC13345_01465) nadC 1530478..1531299 (-) 822 WP_126443540.1 carboxylating nicotinate-nucleotide diphosphorylase -
  EL256_RS07500 (NCTC13345_01466) nadA 1531299..1532309 (-) 1011 WP_126443541.1 quinolinate synthase NadA -
  EL256_RS07505 (NCTC13345_01467) - 1532299..1533102 (-) 804 WP_126443542.1 phosphatidylserine decarboxylase -
  EL256_RS07510 (NCTC13345_01468) - 1533096..1533602 (-) 507 WP_000953107.1 DUF6115 domain-containing protein -
  EL256_RS07515 (NCTC13345_01469) - 1533616..1534110 (-) 495 WP_001893204.1 hypothetical protein -
  EL256_RS07520 (NCTC13345_01470) mqnP 1534103..1534945 (-) 843 WP_232006998.1 menaquinone biosynthesis prenyltransferase MqnP -
  EL256_RS07525 (NCTC13345_01471) comEC/comE3 1535016..1536329 (-) 1314 WP_164758957.1 ComEC/Rec2 family competence protein Machinery gene
  EL256_RS07530 (NCTC13345_01472) - 1536326..1537786 (-) 1461 WP_126443545.1 replicative DNA helicase -
  EL256_RS07535 (NCTC13345_01473) - 1537797..1539191 (-) 1395 WP_126443546.1 NAD(P)H-hydrate dehydratase -
  EL256_RS07540 (NCTC13345_01474) crdS 1539194..1540396 (-) 1203 WP_126443547.1 copper-sensing histidine kinase CrdS -
  EL256_RS07545 (NCTC13345_01475) crdR 1540362..1541003 (-) 642 WP_126443548.1 copper response regulator transcription factor CrdR -

Sequence

Protein


Download         Length: 437 a.a.        Molecular weight: 50108.03 Da        Isoelectric Point: 9.7320

>NTDB_id=1123762 EL256_RS07525 WP_164758957.1 1535016..1536329(-) (comEC/comE3) [Helicobacter pylori strain NCTC13345]
MKDKTFQGAFELLATPKEYLWCGVILSLLLAINLYLEYLNYQKLDFSKPTSLNAQILLQYPKTKDQKTYFVLKLQSKGMI
FYTTIKEPLKNLQYRHAQFFGKIKSCSFLESLKSCFFQTYSFSLMRKQDFKSHARHFIDSAHENALVGNLYRALFIGDSL
NKDLRDRANALGINHLLAISGFHLGILSASVYFLFSLFYTPLQKRYFPYRNAFYDIGVLVWVFLLGYLLLLDFLPSFFRA
FLMGLLGFLACFFGVRILSFKLLVLACCIAIALLPKLLFSVGFLLSVCGVWYIFLFLKHTQIFFKDSSFLMRSFQAIALS
VLVFLNMLIVAHAFFPMFSPYQLFSIPLGLIFIVFFPLSLFLHAVGLGSLLDHILSMPLTIPTISVSSPLWLLGAHLFLT
ILSARFFKVYLSMNVLSAGFFLYCCYQYIIMPGLIVG

Nucleotide


Download         Length: 1314 bp        

>NTDB_id=1123762 EL256_RS07525 WP_164758957.1 1535016..1536329(-) (comEC/comE3) [Helicobacter pylori strain NCTC13345]
TTGAAAGATAAAACCTTTCAGGGGGCGTTTGAACTTCTTGCAACCCCCAAAGAATACTTATGGTGTGGGGTTATTTTAAG
CCTTTTGTTGGCGATTAACCTTTATTTAGAATACTTGAATTACCAAAAGCTTGATTTTTCAAAACCTACAAGCTTGAACG
CTCAAATCTTATTACAATACCCTAAAACGAAAGATCAAAAAACCTATTTTGTCTTAAAGCTCCAATCAAAGGGCATGATC
TTTTACACCACCATTAAAGAGCCTTTAAAAAACCTCCAATACCGCCACGCGCAATTTTTTGGCAAGATCAAATCTTGTTC
GTTCTTAGAGTCTCTAAAATCATGCTTTTTTCAAACTTATTCTTTTTCTTTAATGCGAAAACAAGATTTCAAATCGCATG
CGCGCCATTTCATTGATAGCGCTCATGAAAACGCTTTGGTGGGTAATTTGTATCGAGCGTTATTCATAGGGGATAGCTTG
AATAAAGACTTAAGAGATAGGGCTAACGCGCTAGGGATCAACCACTTACTAGCCATTAGCGGGTTTCATTTAGGGATTTT
GAGCGCGAGCGTGTATTTTCTTTTTTCGCTTTTTTATACCCCCTTACAAAAACGCTATTTCCCTTACAGGAACGCTTTTT
ATGATATAGGGGTTTTGGTGTGGGTTTTTTTGCTGGGGTATTTATTGCTATTAGATTTTTTACCCTCTTTTTTCAGGGCG
TTTTTAATGGGCTTATTAGGGTTTTTGGCATGCTTTTTTGGGGTAAGGATCTTGAGTTTTAAACTTTTGGTTTTAGCGTG
CTGTATCGCCATAGCGTTACTCCCTAAATTGCTTTTTAGCGTGGGGTTTTTGCTTTCTGTTTGTGGGGTGTGGTATATCT
TTTTATTTTTAAAACACACTCAAATTTTTTTTAAAGATTCTTCTTTTTTAATGCGATCGTTTCAAGCGATCGCTTTAAGC
GTGTTAGTGTTTTTGAACATGCTCATTGTTGCGCATGCCTTTTTCCCTATGTTTTCGCCCTACCAGCTCTTTAGCATTCC
TTTAGGCTTGATTTTTATCGTGTTTTTCCCTTTGAGTTTGTTCTTGCATGCGGTGGGTTTAGGGTCTTTATTGGATCATA
TTCTAAGCATGCCTTTAACCATCCCTACGATTTCGGTTTCTTCACCCTTATGGCTTTTAGGGGCGCATTTATTTTTAACG
ATTCTAAGCGCGCGTTTTTTTAAGGTTTATTTAAGCATGAATGTTTTGAGCGCGGGCTTTTTCTTGTATTGTTGCTATCA
ATATATTATAATGCCTGGTTTAATTGTGGGTTAG

Domains

Predicted by InterproScan.

Competence protein (Competence)

(159-391)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEC/comE3 Helicobacter pylori 26695

94.966

100

0.95

Multiple sequence alignment