Detailed information    

insolico Bioinformatically predicted

Overview

Name   comH   Type   Machinery gene
Locus tag   EL256_RS00010 Genome accession   NZ_LR134517
Coordinates   1603..3042 (+) Length   479 a.a.
NCBI ID   WP_126442253.1    Uniprot ID   -
Organism   Helicobacter pylori strain NCTC13345     
Function   import of DNA into the periplasm (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1..8042
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EL256_RS00005 (NCTC13345_00001) dnaA 1..1374 (+) 1374 WP_126442252.1 chromosomal replication initiator protein DnaA -
  EL256_RS00010 (NCTC13345_00002) comH 1603..3042 (+) 1440 WP_126442253.1 competence protein Machinery gene
  EL256_RS00020 (NCTC13345_00004) - 3222..3974 (+) 753 WP_000767561.1 exodeoxyribonuclease III -
  EL256_RS00025 (NCTC13345_00005) - 3971..4606 (-) 636 WP_000668037.1 outer membrane protein -
  EL256_RS00030 (NCTC13345_00006) - 4610..4957 (-) 348 WP_033593879.1 hypothetical protein -
  EL256_RS00035 (NCTC13345_00007) recG 5039..6910 (+) 1872 WP_126442254.1 ATP-dependent DNA helicase RecG -

Sequence

Protein


Download         Length: 479 a.a.        Molecular weight: 54681.50 Da        Isoelectric Point: 6.9523

>NTDB_id=1123744 EL256_RS00010 WP_126442253.1 1603..3042(+) (comH) [Helicobacter pylori strain NCTC13345]
MKKSLCLSFFLTFSNPLQALVIELLEEIKTSPHKGTFKAKVLDSKEPRQVLGVYNISPHKKLTLTITHISTAIVYQPLDE
KLSLETTLSPNRPTIPRNTQIVFSSKELKESHSNPIPSLNAPMQKPQNKPSSSQQSPQNFSYPESKLSSKNSKNSLLQPL
VTPSKVSHTNEVKTPTTDTNPPLKHSSQDQENNLFIAPPTEKTLPNNTPNADASENNESNENRDNVEKQAIRDPNVKEFA
CGKWVYDDENLQAYRPSILKRVDEDKQTATDITPCDYSTAENKSGKIITPYTKISVHKTEPLEEPQTFEAKNNFAILQAR
SSTEKCKRARARKDGTTRQCYLIEEPLKQAWESEYEITTQLVKAIYERPKQDDQIEPTFYETSELAYSSTRKSEITRNEL
NLNEKFMEFVEVYEGHYLNDIVKESSEYKEWVKNHVRFKEGVCMALEIEEQPRAKSTPLSIENSRVVCVKKGNYLFNEV

Nucleotide


Download         Length: 1440 bp        

>NTDB_id=1123744 EL256_RS00010 WP_126442253.1 1603..3042(+) (comH) [Helicobacter pylori strain NCTC13345]
ATGAAAAAATCCCTTTGTCTGTCTTTCTTTCTGACTTTCTCTAACCCTCTTCAAGCCCTTGTGATCGAGCTTTTAGAAGA
GATCAAAACTTCGCCGCATAAAGGCACTTTTAAGGCTAAAGTCCTTGATTCTAAAGAACCAAGACAAGTTTTAGGCGTTT
ATAATATCTCCCCACACAAAAAACTCACGCTCACTATCACCCACATATCCACTGCAATCGTCTATCAACCCCTTGATGAA
AAACTTTCTTTAGAAACGACCTTAAGCCCTAACCGCCCTACTATCCCTAGAAACACCCAAATCGTTTTTTCTTCAAAGGA
ATTGAAAGAATCGCACTCAAACCCAATACCTTCTTTAAACGCGCCCATGCAAAAACCACAAAATAAACCCAGCTCATCGC
AACAATCTCCTCAAAACTTTTCTTACCCAGAATCCAAACTAAGCTCTAAAAACTCTAAAAACAGCCTTTTACAGCCTTTA
GTAACTCCTAGCAAAGTAAGCCACACTAACGAAGTTAAAACGCCAACAACCGACACTAATCCCCCTTTAAAACATTCTTC
ACAAGATCAAGAAAATAACCTCTTTATAGCGCCACCCACTGAAAAAACGCTCCCTAACAACACCCCTAACGCTGATGCGA
GTGAAAACAATGAAAGCAACGAAAATAGGGACAATGTGGAAAAACAAGCCATTAGAGATCCTAATGTTAAAGAATTTGCG
TGCGGAAAATGGGTTTATGATGATGAAAATTTACAAGCCTATCGCCCAAGCATTTTAAAACGCGTTGATGAAGACAAACA
AACTGCGACAGATATTACCCCTTGCGATTACAGCACCGCTGAAAATAAAAGCGGTAAAATCATTACCCCTTATACTAAAA
TCTCTGTTCATAAAACAGAGCCTTTAGAAGAGCCACAAACTTTTGAAGCTAAAAACAATTTCGCCATTCTTCAAGCCAGA
AGCTCTACAGAAAAATGCAAAAGGGCCAGAGCAAGAAAAGACGGCACGACTAGGCAATGCTATCTGATAGAAGAGCCTTT
AAAACAAGCATGGGAGAGTGAGTATGAAATCACCACGCAATTAGTGAAAGCCATTTATGAGCGCCCCAAACAAGACGACC
AAATAGAGCCGACTTTTTATGAAACTAGCGAATTGGCTTATTCTTCCACACGAAAAAGCGAAATAACGCGCAATGAATTG
AATTTGAATGAAAAATTCATGGAATTTGTGGAAGTGTATGAGGGGCATTATTTAAACGATATAGTCAAAGAGAGCAGTGA
ATACAAAGAATGGGTTAAAAACCATGTGCGCTTTAAAGAGGGGGTGTGCATGGCCTTAGAAATAGAAGAGCAACCACGAG
CCAAAAGCACGCCTTTGAGTATTGAAAACTCTCGTGTTGTGTGTGTCAAAAAGGGGAATTATTTATTCAATGAAGTTTAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comH Helicobacter pylori 26695

93.737

100

0.937

Multiple sequence alignment