Detailed information    

insolico Bioinformatically predicted

Overview

Name   recC   Type   Machinery gene
Locus tag   EL276_RS08435 Genome accession   NZ_LR134516
Coordinates   1834328..1837543 (-) Length   1071 a.a.
NCBI ID   WP_126304984.1    Uniprot ID   A0A448UDI9
Organism   Neisseria animaloris strain NCTC12227     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1829328..1842543
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EL276_RS08420 (NCTC12227_01716) - 1829880..1830218 (+) 339 WP_107879383.1 PepSY domain-containing protein -
  EL276_RS08425 (NCTC12227_01717) dnaE 1830357..1833791 (+) 3435 WP_126305245.1 DNA polymerase III subunit alpha -
  EL276_RS08430 - 1833759..1834127 (-) 369 WP_126304983.1 hypothetical protein -
  EL276_RS08435 (NCTC12227_01718) recC 1834328..1837543 (-) 3216 WP_126304984.1 exodeoxyribonuclease V subunit gamma Machinery gene
  EL276_RS08440 (NCTC12227_01719) - 1837542..1837820 (+) 279 WP_126304985.1 hypothetical protein -
  EL276_RS08445 (NCTC12227_01720) - 1837921..1838742 (-) 822 WP_172594906.1 class I SAM-dependent methyltransferase -
  EL276_RS08450 (NCTC12227_01721) trkA 1838979..1840379 (-) 1401 WP_107928649.1 Trk system potassium transporter TrkA -
  EL276_RS08455 (NCTC12227_01722) - 1840684..1842069 (+) 1386 WP_126304987.1 GntP family permease -

Sequence

Protein


Download         Length: 1071 a.a.        Molecular weight: 120883.28 Da        Isoelectric Point: 5.8269

>NTDB_id=1123736 EL276_RS08435 WP_126304984.1 1834328..1837543(-) (recC) [Neisseria animaloris strain NCTC12227]
MLYLYQSNRLENLAAVFTRLQQLAPLQNPLAAEQIVVQSQGMRRYLNTYLARELGVAANLHFSLPAGLTWRLMCGLIPDI
PALSPFAPEVMRWRLLDLFQSPVFQTASEYEAARSALHGYLGSGESAAYQLAGQLADIFDQYLVYRPQWINTWQAGGLVG
LGGDEIWQAQLWRYLDDGRQTAPHRVALWRQLLDALSADKLPERFFVFGIATMAPMYLQLLQALAEHCDVHIFALNPSSE
YWGNVIEAAQILQSEDDIDLSQSGHPLLASLGKQGRDFFDALAEAQITEERNYFTDMESVQTASEPTLLHRLQHDIQILT
LPSEKTNRATLDDGSVRVVSAHSPLRELQVLKDQLLKILAEHPDWQPHDIAVLTPNIEPYSPFIEAVFGQAQDGAQALPY
SVSDVKLSHRQPLLYALEQTLALLESRFEVNRLLPLLDNNLVLDRFGLGREDLPLLHDTIAKLNIHWGLDGTMRGRNDNL
FTWQQGLERLVLGWLLPESSNPLWLDISAWHGDPNQTAVFSRFTAFVRTLADTARRWQQPAGIEEWTERVRRLLADLFAP
GSDDQHALQQLEQALARWQEEAALARFGSKLPRHTVIRHLGRFLDSESQAGFLRGGITFCSMVPMRSLPFKVICLLGLND
GNFPRNTKAAAFDLIAKYPQKGDRARRDDDRYLFLEAIISAREILYLSYVGRSIHSDEPLAPSALLNELIDTVAAMTGTR
SKDLHEQWVRQQPLQAFSHRYFSPQAFSDGLVSSRKDYAAALNAPAAEVGPFFSEPLGNAPDPAAPQMIGHHEFIAFWRN
PVRAWLQHTLGWREPYRDGAWESAEPFEPRQPEAIVAAYTAARRNREDFRQTERRLQAASLFPAGELGTLWQNRYQTDAK
SLDGELVCSPKLPARPYTLVLENGTLEGSLNHLYRHGQIYFLNKTPSAPDRIARMLEHLIFCAVGPSETDCRATHLLLPG
NPQTLPEIPRQTACELLEKWLEYYRFGQTRPLPFFAKTSLAAAEEWQKTGEGGKALSRAYKEYLGNKKSTGQKSYTEVAL
VFGGTDPIETPLFLNLIEDLLRPLLQNLNAE

Nucleotide


Download         Length: 3216 bp        

>NTDB_id=1123736 EL276_RS08435 WP_126304984.1 1834328..1837543(-) (recC) [Neisseria animaloris strain NCTC12227]
ATGCTTTATCTTTACCAATCCAACCGCCTTGAAAACCTTGCCGCCGTTTTCACCCGGCTACAACAGCTTGCCCCGCTGCA
AAACCCGCTGGCGGCGGAGCAGATTGTGGTGCAAAGCCAAGGCATGCGCCGTTATCTGAACACGTATCTCGCGCGCGAAT
TAGGCGTGGCGGCTAACCTGCATTTCAGTCTGCCCGCCGGTTTGACTTGGCGGCTGATGTGCGGTCTGATTCCCGATATT
CCCGCCCTCAGCCCGTTTGCGCCCGAAGTGATGCGCTGGCGGCTGCTCGATTTGTTTCAAAGCCCCGTTTTTCAGACGGC
CTCCGAATACGAAGCGGCACGCTCGGCACTGCACGGCTACCTCGGCAGCGGCGAATCGGCGGCCTATCAGTTGGCGGGGC
AGCTTGCCGATATTTTCGACCAATATCTGGTTTACCGCCCGCAATGGATCAACACTTGGCAAGCCGGCGGGCTGGTAGGA
TTGGGCGGCGACGAAATCTGGCAGGCGCAGTTGTGGCGTTATCTCGACGACGGCCGCCAAACCGCTCCCCACCGCGTGGC
CTTGTGGCGGCAACTACTCGACGCATTGAGCGCCGACAAACTGCCCGAACGCTTTTTCGTGTTCGGCATCGCAACCATGG
CACCGATGTATCTGCAACTGTTGCAGGCGCTGGCCGAGCATTGCGACGTACACATTTTCGCGCTCAACCCCAGCAGCGAA
TACTGGGGTAACGTTATCGAAGCCGCGCAGATTCTGCAAAGCGAAGACGACATCGACCTTTCGCAAAGCGGCCATCCGCT
GCTAGCCTCGCTGGGCAAACAAGGGCGCGATTTTTTCGATGCGCTTGCCGAAGCGCAGATTACCGAAGAGCGCAACTATT
TCACCGACATGGAAAGCGTTCAGACGGCCTCCGAACCTACTTTGCTGCACCGTTTGCAGCATGACATCCAAATCCTGACC
CTGCCGTCTGAAAAAACAAACAGAGCCACGTTGGACGACGGCTCCGTCCGCGTGGTTTCCGCCCACAGCCCCCTGCGCGA
ATTGCAGGTGTTGAAAGACCAACTGCTGAAGATTCTTGCCGAACACCCCGATTGGCAGCCGCACGACATCGCCGTGCTTA
CTCCGAACATCGAACCTTACAGTCCCTTTATCGAAGCCGTGTTCGGGCAGGCGCAGGACGGCGCACAGGCATTGCCGTAT
TCCGTCTCCGACGTGAAACTCAGCCACCGCCAGCCCTTACTCTATGCGCTCGAACAAACCCTCGCGCTGCTCGAAAGCCG
TTTTGAAGTAAACCGCCTGCTGCCGCTGTTAGACAACAACCTCGTGCTCGACCGCTTCGGCCTCGGCCGCGAAGATTTGC
CGCTGCTGCACGATACCATCGCCAAACTCAACATCCATTGGGGCTTGGACGGCACCATGCGCGGCCGCAACGACAACCTT
TTTACTTGGCAGCAAGGTTTGGAACGGCTCGTGCTCGGCTGGCTGCTGCCCGAAAGCAGCAATCCCTTGTGGCTCGACAT
CAGCGCATGGCACGGCGACCCCAACCAAACCGCCGTGTTCAGCCGCTTCACCGCTTTCGTGCGCACGCTGGCCGACACCG
CCCGCCGCTGGCAGCAGCCCGCAGGCATAGAAGAATGGACGGAACGCGTGCGCCGGCTGCTCGCCGATCTTTTCGCCCCG
GGCAGCGACGACCAACACGCTCTGCAACAGCTCGAACAGGCACTTGCCCGCTGGCAGGAAGAAGCCGCACTCGCCCGTTT
CGGCAGCAAACTGCCCCGACACACCGTCATCCGCCATCTCGGCCGCTTTCTCGACAGCGAAAGCCAAGCCGGATTTTTGC
GCGGCGGCATCACCTTTTGCAGCATGGTGCCCATGCGCAGCCTGCCGTTCAAAGTGATCTGCCTGCTCGGGCTGAATGAC
GGCAATTTCCCGCGCAACACCAAAGCCGCCGCCTTCGACCTGATTGCCAAGTACCCGCAAAAAGGCGACCGCGCCCGCCG
CGACGACGACCGTTATCTTTTCCTCGAAGCCATCATCAGCGCGCGCGAAATCCTCTATCTGTCTTATGTAGGGCGCAGCA
TCCACAGCGACGAACCGCTTGCCCCCTCCGCCCTGCTCAACGAACTCATCGATACCGTTGCCGCCATGACCGGCACGCGC
AGTAAAGACTTGCACGAACAATGGGTCAGGCAGCAGCCCTTGCAAGCCTTCTCACACCGTTATTTTTCCCCGCAGGCTTT
TTCAGACGGCCTCGTCAGTTCCCGCAAAGACTATGCCGCCGCCCTCAATGCCCCCGCTGCCGAAGTCGGGCCGTTTTTCA
GCGAGCCGCTCGGCAACGCTCCCGACCCCGCCGCGCCGCAAATGATCGGCCACCACGAATTCATCGCTTTTTGGCGCAAC
CCCGTACGTGCGTGGCTGCAACACACCCTCGGCTGGCGCGAACCTTACCGCGACGGCGCATGGGAATCCGCCGAACCTTT
CGAACCGCGGCAGCCGGAAGCCATCGTCGCCGCCTACACCGCCGCCCGCCGCAACCGCGAAGATTTCCGGCAAACCGAAC
GCCGCCTGCAAGCCGCCAGCCTTTTCCCCGCAGGCGAACTCGGCACATTGTGGCAAAACCGATATCAAACCGACGCCAAA
TCACTGGACGGCGAACTCGTATGCAGCCCCAAACTGCCCGCCCGCCCCTACACCCTCGTTTTGGAAAACGGCACGCTCGA
AGGCAGCCTCAATCATCTCTACCGGCACGGGCAGATTTATTTTTTAAACAAAACACCCTCGGCTCCCGACCGCATCGCCC
GCATGCTCGAGCACCTTATTTTCTGTGCCGTGGGGCCGTCTGAAACCGACTGCCGCGCCACCCATCTGCTTCTGCCCGGC
AACCCCCAAACCTTACCCGAAATCCCCCGGCAGACCGCTTGCGAACTCTTGGAAAAGTGGCTCGAATACTACCGGTTCGG
CCAAACCCGTCCGCTGCCCTTTTTCGCCAAAACCAGCCTTGCCGCCGCCGAAGAATGGCAGAAAACCGGAGAGGGCGGAA
AAGCCCTTTCCAGAGCCTATAAAGAATATCTCGGCAATAAAAAAAGCACCGGCCAGAAAAGCTATACCGAAGTGGCGCTG
GTGTTCGGCGGCACCGACCCCATAGAAACGCCGCTGTTTTTGAATCTGATTGAAGACTTGCTGCGGCCTTTGTTGCAGAA
CTTGAATGCCGAATAG

Domains

Predicted by InterproScan.

RecC C-terminal domain (RecC_C)

(789-1005)

Exodeoxyribonuclease V, gamma subunit (Exonuc_V_gamma)

(2-316)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A448UDI9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recC Neisseria gonorrhoeae strain FA1090

64.839

98.786

0.641

Multiple sequence alignment