Detailed information    

insolico Bioinformatically predicted

Overview

Name   ceuB   Type   Machinery gene
Locus tag   LA50_RS06990 Genome accession   NZ_CP009418
Coordinates   1293059..1294027 (-) Length   322 a.a.
NCBI ID   WP_002226764.1    Uniprot ID   -
Organism   Neisseria meningitidis strain NM3686     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1288059..1299027
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LA50_RS06965 (LA50_07345) - 1288646..1288984 (+) 339 WP_002218119.1 P-II family nitrogen regulator -
  LA50_RS06970 (LA50_07350) - 1289050..1290267 (-) 1218 WP_002248372.1 YadA C-terminal domain-containing protein -
  LA50_RS06975 (LA50_07355) - 1290583..1291341 (-) 759 WP_002226767.1 ABC transporter ATP-binding protein -
  LA50_RS06980 (LA50_07360) - 1291424..1292050 (-) 627 WP_002226766.1 FmdE family protein -
  LA50_RS06985 (LA50_07365) - 1292095..1293069 (-) 975 WP_002226765.1 iron chelate uptake ABC transporter family permease subunit -
  LA50_RS06990 (LA50_07370) ceuB 1293059..1294027 (-) 969 WP_002226764.1 ABC transporter permease Machinery gene
  LA50_RS14410 - 1294024..1294173 (-) 150 WP_162013446.1 hypothetical protein -
  LA50_RS06995 (LA50_07375) - 1294191..1295156 (-) 966 WP_002248553.1 siderophore ABC transporter substrate-binding protein -
  LA50_RS07000 (LA50_07380) fetA 1295874..1298015 (-) 2142 WP_002248370.1 TonB-dependent siderophore receptor FetA/FrpB -
  LA50_RS13980 - 1298777..1298923 (+) 147 WP_002240086.1 hypothetical protein -

Sequence

Protein


Download         Length: 322 a.a.        Molecular weight: 34409.68 Da        Isoelectric Point: 10.0891

>NTDB_id=112369 LA50_RS06990 WP_002226764.1 1293059..1294027(-) (ceuB) [Neisseria meningitidis strain NM3686]
MTAKPFSLNLTNLLLLAVLFAVSLSVGVADFRWSDVFSLSDSQQVMFISRLPRTFAIVLTGASMAVAGMIMQILMRNRFV
EPSMAGAGQSAALGLLLMSLLLPAAPLPVKMSVAAVAALIGMLVFMLLIRRLPPTAQLMVPLVGIIFGGVVEAVATFIAY
ENEMLQMLGVWQQGDFSSVLLGRYELLWITGGLAVFAYLIADRLTILGLGETVSVNLGLNRTAVLWSGLIIVALITSLVI
VTVGNIPFIGLVVPNIISRLIGDRLRQSLPAVALLGASLVLLCDIIGRVIVFPFEIPVSTVFGVLGTALFLWLLLRKPAH
AV

Nucleotide


Download         Length: 969 bp        

>NTDB_id=112369 LA50_RS06990 WP_002226764.1 1293059..1294027(-) (ceuB) [Neisseria meningitidis strain NM3686]
ATGACTGCCAAACCTTTTTCCCTCAACCTGACCAACCTCCTGCTGCTGGCGGTATTGTTTGCCGTCAGCCTGTCGGTGGG
CGTTGCCGATTTCCGCTGGTCGGATGTGTTTTCGCTATCCGACAGCCAGCAGGTCATGTTCATCAGCCGCCTGCCGCGCA
CGTTTGCGATTGTGCTGACGGGCGCGTCTATGGCGGTGGCGGGCATGATTATGCAGATTCTGATGCGTAACCGTTTTGTC
GAGCCTTCTATGGCGGGTGCGGGTCAGAGTGCGGCTTTGGGTTTGCTTCTGATGTCCCTGCTGCTGCCTGCCGCGCCGCT
GCCGGTCAAAATGTCGGTTGCCGCCGTTGCCGCGCTAATCGGGATGCTGGTGTTTATGCTGCTGATCCGCCGCCTGCCGC
CGACGGCGCAACTGATGGTGCCGCTGGTGGGGATTATTTTCGGCGGCGTGGTTGAGGCGGTGGCGACGTTTATCGCGTAT
GAAAACGAAATGCTGCAAATGCTCGGCGTGTGGCAGCAGGGCGATTTTTCGAGCGTGCTGCTGGGGCGGTACGAGCTGCT
TTGGATTACGGGCGGTTTGGCGGTGTTTGCCTATCTGATTGCCGACCGGCTGACGATTTTGGGGCTGGGCGAGACGGTCA
GCGTGAATTTGGGTTTGAACCGGACGGCGGTGTTGTGGTCGGGGCTGATTATTGTAGCACTGATTACATCGCTGGTCATT
GTAACGGTCGGCAATATTCCGTTTATCGGGCTGGTCGTGCCGAACATCATCAGCCGCCTGATAGGCGACAGGCTGCGCCA
AAGCCTGCCTGCGGTGGCCTTGTTGGGCGCGTCTTTGGTTTTATTGTGCGACATTATCGGACGCGTGATTGTGTTTCCGT
TTGAAATTCCGGTCTCTACGGTTTTTGGTGTGTTGGGTACGGCTTTGTTTTTGTGGCTTTTGTTAAGGAAACCTGCTCAT
GCCGTCTGA

Domains

Predicted by InterProScan.

FecCD transport family (FecCD)

(15-316)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ceuB Campylobacter jejuni subsp. jejuni 81-176

41.528

93.478

0.388

Multiple sequence alignment