Detailed information    

insolico Bioinformatically predicted

Overview

Name   oppD   Type   Regulator
Locus tag   EL254_RS01025 Genome accession   NZ_LR134512
Coordinates   162581..163627 (+) Length   348 a.a.
NCBI ID   WP_000410285.1    Uniprot ID   -
Organism   Streptococcus agalactiae strain NCTC13949     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 157581..168627
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EL254_RS01010 (NCTC13949_00201) - 158839..160494 (+) 1656 WP_001118749.1 peptide ABC transporter substrate-binding protein -
  EL254_RS01015 (NCTC13949_00202) - 160613..161527 (+) 915 WP_000598965.1 ABC transporter permease -
  EL254_RS01020 (NCTC13949_00203) - 161537..162568 (+) 1032 WP_000764052.1 ABC transporter permease -
  EL254_RS01025 (NCTC13949_00204) oppD 162581..163627 (+) 1047 WP_000410285.1 ABC transporter ATP-binding protein Regulator
  EL254_RS01030 (NCTC13949_00205) amiF 163627..164559 (+) 933 WP_000138506.1 ABC transporter ATP-binding protein Regulator

Sequence

Protein


Download         Length: 348 a.a.        Molecular weight: 38725.18 Da        Isoelectric Point: 4.7633

>NTDB_id=1123602 EL254_RS01025 WP_000410285.1 162581..163627(+) (oppD) [Streptococcus agalactiae strain NCTC13949]
MEKETILSVNNLHVDFHTYAGEVKAIRDVNFELKKGETLAIVGESGSGKSVTTRTLIGLNAKNSEISGNVQFKGHNLVEL
SEEEWTKVRGNEISMIFQDPMTSLDPTMKIGMQIAEPMMIHQKISKKDALKLALELMKDVGIPNAEEHINDYPHQWSGGM
RQRAVIAIALAADPEILIADEPTTALDVTIQAQILNLMKKIQAERDSSIVFITHDLGVVAGMADRVAVMYAGKIVEFGTV
DEVFYNPQHPYTWGLLNSMPTTDTESGSLESIPGTPPDLLNPPKGDAFAARNEFALDIDHEEEPPYFKVSETHFAATWLL
DERSPKVLPPLPIQKRWEKWNEIEGRKA

Nucleotide


Download         Length: 1047 bp        

>NTDB_id=1123602 EL254_RS01025 WP_000410285.1 162581..163627(+) (oppD) [Streptococcus agalactiae strain NCTC13949]
ATGGAAAAAGAAACTATTTTAAGTGTTAATAATCTTCATGTTGACTTCCACACATATGCTGGAGAAGTAAAAGCAATTCG
TGATGTCAACTTTGAATTAAAAAAAGGTGAGACTCTTGCAATCGTTGGTGAATCTGGTTCAGGAAAATCTGTAACTACCA
GAACTTTAATTGGTTTAAATGCTAAAAATTCAGAGATATCAGGGAATGTTCAATTTAAGGGGCATAACCTTGTTGAACTA
TCAGAAGAAGAGTGGACTAAGGTACGCGGGAATGAGATTTCTATGATTTTCCAAGACCCTATGACTAGTTTGGATCCAAC
GATGAAAATTGGCATGCAAATAGCAGAACCAATGATGATTCATCAAAAAATTTCAAAAAAGGATGCTTTAAAATTAGCTC
TTGAGCTAATGAAAGATGTAGGTATCCCAAATGCTGAAGAGCATATTAATGATTACCCACATCAGTGGTCTGGAGGAATG
CGCCAACGTGCGGTTATAGCGATTGCTTTAGCTGCTGATCCTGAAATTCTTATTGCTGATGAACCAACGACTGCTTTAGA
TGTAACAATTCAAGCACAAATTTTGAACTTAATGAAAAAAATTCAAGCAGAACGAGACTCCTCCATTGTTTTCATAACTC
ATGACTTAGGGGTCGTTGCAGGGATGGCAGACCGTGTAGCAGTTATGTATGCAGGGAAAATTGTTGAATTTGGAACTGTT
GATGAAGTCTTTTATAATCCACAACATCCATATACTTGGGGATTATTGAATTCAATGCCGACAACCGACACAGAATCAGG
TAGTTTAGAGTCAATTCCGGGAACACCACCAGATTTGTTGAACCCACCTAAAGGAGATGCATTTGCAGCTCGTAATGAAT
TTGCATTAGATATTGATCATGAAGAAGAACCACCGTACTTCAAAGTTTCAGAAACACATTTCGCTGCTACATGGCTTTTA
GATGAAAGATCACCTAAGGTGCTTCCTCCATTACCGATCCAAAAACGTTGGGAAAAATGGAACGAGATTGAAGGGAGGAA
AGCCTAA

Domains

Predicted by InterproScan.

Oligopeptide/dipeptide transporter, C-terminal region (oligo_HPY)

(235-297)

ABC transporter (ABC_tran)

(27-183)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  oppD Streptococcus mutans UA159

79.251

99.713

0.79
  amiE Streptococcus salivarius strain HSISS4

55.162

97.414

0.537
  amiE Streptococcus thermophilus LMG 18311

54.572

97.414

0.532
  amiE Streptococcus thermophilus LMD-9

54.572

97.414

0.532

Multiple sequence alignment