Detailed information NTG1123584

Bioinformatically predicted

Overview

• Name: waaF
• Type: Regulator
• Locus tag: EL243_RS05665
• Genome accession: NZ_LR134511
• Coordinates: 1080715..1081674 (+)
• Length: 319 a.a.
• NCBI ID: WP_002875425.1
• Uniprot ID: -
• Organism: Campylobacter jejuni subsp. jejuni strain NCTC10983
• Function: repress natural transformation (predicted from homology) Competence regulation

Genomic Context

Location: 1075715..1086674

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
EL243_RS05645 (NCTC10983_01138)	neuC	1076281..1077396 (+)	1116	WP_002858400.1	UDP-N-acetylglucosamine 2-epimerase	-
EL243_RS08865	-	1077393..1078307 (+)	915	Protein_1087	beta-1,4-N-acetylgalactosaminyltransferase	-
EL243_RS08870	-	1078341..1079003 (+)	663	WP_002881429.1	N-acylneuraminate cytidylyltransferase	-
EL243_RS05655	-	1078998..1079848 (-)	851	Protein_1089	glycosyltransferase	-
EL243_RS05660 (NCTC10983_01142)	waaV	1079832..1080656 (-)	825	WP_002858096.1	glycosyltransferase family 2 protein	-
EL243_RS05665 (NCTC10983_01143)	waaF	1080715..1081674 (+)	960	WP_002875425.1	lipopolysaccharide heptosyltransferase II	Regulator
EL243_RS05670 (NCTC10983_01144)	gmhA	1081655..1082215 (-)	561	WP_002858021.1	D-sedoheptulose 7-phosphate isomerase	-
EL243_RS05675 (NCTC10983_01145)	rfaE1	1082212..1083597 (-)	1386	WP_002858114.1	D-glycero-beta-D-manno-heptose-7-phosphate kinase	-
EL243_RS05680 (NCTC10983_01146)	rfaD	1083590..1084543 (-)	954	WP_002858041.1	ADP-glyceromanno-heptose 6-epimerase	-
EL243_RS05685 (NCTC10983_01147)	gmhB	1084544..1085104 (-)	561	WP_002853963.1	D-glycero-alpha-D-manno-heptose-1,7-bisphosphate 7-phosphatase	-
EL243_RS05690 (NCTC10983_01148)	-	1085186..1085488 (+)	303	WP_002852762.1	cytochrome c	-
EL243_RS05695 (NCTC10983_01149)	ccoS	1085511..1085717 (-)	207	WP_002852798.1	cbb3-type cytochrome oxidase assembly protein CcoS	-

Sequence

Protein

• Length: 319 a.a.
• Molecular weight: 36734.30 Da
• Isoelectric Point: 10.2412

>NTDB_id=1123584 EL243_RS05665 WP_002875425.1 1080715..1081674(+) (waaF) [Campylobacter jejuni subsp. jejuni strain NCTC10983]
MKIFIHLPTWLGDTVMASPALYTIKEHFKDAQFILYGSFVSTALFKEFPNSKIIIENKLSRYKQALSLRKELGKIDLSFA
FRSAFSSKIILHILKTKQRYFFDKNKYKEEHQVLKYLYFIENSLSIKAHFKDLKLPFKLKFQNPLILRNGKKILGLNPGA
SFGSAKRWDASYFAKVALNFSQSHDILIFGAGKAEQELCNEIYQILKEQNIKVKNLCNKTTIKTLCQNIAFCDLFITNDS
GPMHLSAVYKVKTVAIFGPTKFTQTSPWQNENAKLVHLDLACMPCMQKTCPLKHHKCMKDLKPEKVIEQAKNLLKNSHL

Nucleotide

• Length: 960 bp

>NTDB_id=1123584 EL243_RS05665 WP_002875425.1 1080715..1081674(+) (waaF) [Campylobacter jejuni subsp. jejuni strain NCTC10983]
ATGAAAATTTTTATACATCTTCCCACCTGGTTAGGCGATACGGTAATGGCTTCACCTGCTTTATACACTATAAAAGAACA
TTTTAAAGATGCTCAGTTTATCCTTTATGGTTCTTTTGTTTCTACAGCACTTTTTAAAGAATTTCCTAATTCTAAAATCA
TCATAGAAAATAAACTATCCCGTTATAAACAAGCTCTATCTTTACGCAAAGAACTTGGTAAAATCGATCTTAGCTTTGCT
TTTAGATCTGCGTTCTCTTCTAAGATTATCTTGCATATCCTTAAAACAAAACAAAGATATTTTTTTGACAAAAACAAGTA
CAAAGAAGAACATCAAGTTTTAAAATACCTTTATTTTATAGAAAATTCACTTAGTATAAAAGCTCATTTTAAGGACTTAA
AGCTTCCCTTTAAGCTAAAATTTCAAAACCCTCTTATCTTAAGAAATGGTAAAAAAATTCTAGGACTCAACCCTGGTGCA
AGCTTTGGAAGTGCAAAAAGATGGGATGCGAGTTATTTTGCTAAAGTGGCTTTAAATTTCAGCCAAAGTCATGATATTTT
AATCTTTGGTGCAGGAAAAGCCGAACAAGAACTTTGTAATGAAATTTATCAAATTTTAAAAGAACAAAACATAAAAGTAA
AAAATCTTTGCAATAAAACCACCATCAAAACCCTTTGTCAAAATATCGCTTTTTGCGATCTTTTCATCACAAATGACAGT
GGACCTATGCACCTAAGTGCGGTTTATAAGGTAAAAACCGTAGCTATTTTTGGCCCTACGAAATTTACTCAAACTTCACC
TTGGCAAAATGAAAATGCAAAATTAGTGCATTTAGATCTAGCTTGTATGCCTTGTATGCAAAAAACCTGCCCTTTAAAAC
ACCACAAATGCATGAAAGATCTAAAGCCTGAAAAAGTGATAGAACAGGCTAAAAATTTACTTAAAAACTCTCATCTATGA

Domains

Predicted by InterproScan.

• Glycosyltransferase family 9 (heptosyltransferase) (Glyco_transf_9) (94-294)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
waaF	Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819	100	100	1