Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprB   Type   Machinery gene
Locus tag   EL247_RS01050 Genome accession   NZ_LR134509
Coordinates   213867..214274 (-) Length   135 a.a.
NCBI ID   WP_104745475.1    Uniprot ID   -
Organism   Helicobacter pullorum strain NCTC13154     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 208867..219274
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EL247_RS01035 (NCTC13154_00214) - 209328..211436 (+) 2109 WP_145961916.1 methyl-accepting chemotaxis protein -
  EL247_RS01040 (NCTC13154_00215) - 211567..212493 (+) 927 WP_005021991.1 OmpA family protein -
  EL247_RS01045 (NCTC13154_00216) - 212496..213890 (+) 1395 WP_054195393.1 chemotaxis protein CheX -
  EL247_RS01050 (NCTC13154_00217) dprB 213867..214274 (-) 408 WP_104745475.1 Holliday junction resolvase RuvX Machinery gene
  EL247_RS01055 (NCTC13154_00218) - 214274..215035 (-) 762 WP_104745476.1 DNA-processing protein DprA -
  EL247_RS01060 (NCTC13154_00219) - 215022..217166 (-) 2145 WP_060661502.1 WD40 repeat domain-containing protein -
  EL247_RS01065 (NCTC13154_00220) - 217219..218235 (-) 1017 WP_060663018.1 divergent polysaccharide deacetylase family protein -
  EL247_RS01070 (NCTC13154_00221) minE 218242..218478 (-) 237 WP_005022002.1 cell division topological specificity factor MinE -

Sequence

Protein


Download         Length: 135 a.a.        Molecular weight: 15324.06 Da        Isoelectric Point: 10.2039

>NTDB_id=1123547 EL247_RS01050 WP_104745475.1 213867..214274(-) (dprB) [Helicobacter pullorum strain NCTC13154]
MQNIIALDIGLKRIGIAQFLQNIPIPLPPILRKNRNQAARDISNLIQMKNPQILVIGIPQDGDSSLEMERRIKHFINLLE
IPKGIEICFIDESFSSFEALQKMQGSKKNKKKDGSLDSLAALIILERYLMSQKQN

Nucleotide


Download         Length: 408 bp        

>NTDB_id=1123547 EL247_RS01050 WP_104745475.1 213867..214274(-) (dprB) [Helicobacter pullorum strain NCTC13154]
ATGCAAAATATCATTGCTTTAGACATCGGATTAAAGCGGATTGGAATCGCACAATTCTTGCAAAATATCCCGATACCTTT
ACCCCCTATTTTACGCAAGAATCGCAATCAAGCAGCAAGAGATATAAGCAATCTTATCCAAATGAAAAATCCACAAATTT
TAGTCATTGGCATTCCACAAGATGGCGATTCATCTTTAGAAATGGAACGCAGAATCAAACATTTCATCAACCTACTTGAG
ATTCCAAAAGGGATAGAAATTTGCTTTATTGATGAATCTTTTAGCTCTTTTGAAGCACTTCAAAAAATGCAAGGAAGCAA
GAAAAATAAGAAAAAAGATGGGAGTTTAGATAGCCTTGCGGCTCTTATTATTTTAGAAAGATACTTAATGAGCCAAAAAC
AAAATTAA

Domains

Predicted by InterproScan.

Holliday junction resolvase (RuvX)

(3-130)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprB Helicobacter pylori 26695

52.713

95.556

0.504

Multiple sequence alignment