Detailed information    

insolico Bioinformatically predicted

Overview

Name   waaF   Type   Regulator
Locus tag   EL235_RS06155 Genome accession   NZ_LR134508
Coordinates   1203333..1204253 (-) Length   306 a.a.
NCBI ID   WP_126341036.1    Uniprot ID   -
Organism   Campylobacter lari strain NCTC11937     
Function   repress natural transformation (predicted from homology)   
Competence regulation

Genomic Context

Location: 1198333..1209253
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EL235_RS06135 (NCTC11937_01233) cysK 1199302..1200204 (-) 903 WP_126341033.1 cysteine synthase A -
  EL235_RS06140 (NCTC11937_01234) - 1200301..1200603 (-) 303 WP_039619003.1 HU family DNA-binding protein -
  EL235_RS06145 (NCTC11937_01235) - 1200682..1201818 (-) 1137 WP_126341034.1 hypothetical protein -
  EL235_RS06150 (NCTC11937_01236) - 1201827..1203332 (-) 1506 WP_126341035.1 MBOAT family O-acyltransferase -
  EL235_RS06155 (NCTC11937_01237) waaF 1203333..1204253 (-) 921 WP_126341036.1 lipopolysaccharide heptosyltransferase II Regulator
  EL235_RS06160 (NCTC11937_01238) - 1204267..1205379 (-) 1113 WP_126341037.1 hypothetical protein -
  EL235_RS06165 (NCTC11937_01239) - 1205388..1206890 (-) 1503 WP_126341038.1 MBOAT family O-acyltransferase -
  EL235_RS06170 (NCTC11937_01240) - 1206948..1207760 (+) 813 WP_126341039.1 glycosyltransferase family 2 protein -
  EL235_RS06175 (NCTC11937_01241) rfbA 1207778..1208653 (+) 876 WP_126341040.1 glucose-1-phosphate thymidylyltransferase RfbA -

Sequence

Protein


Download         Length: 306 a.a.        Molecular weight: 34785.88 Da        Isoelectric Point: 10.2830

>NTDB_id=1123541 EL235_RS06155 WP_126341036.1 1203333..1204253(-) (waaF) [Campylobacter lari strain NCTC11937]
MNIFINLPTWLGDAVMASAAIYAIKEKYPQAKFTFYGSFVSTELFKRFENAQILVENKKQRYKQILQARKNLGKFDLAFS
FRSAFSSKIILNLIKAKKRFYFDKNILKEEHQVLKYLNFIEKALNFKATSNSLKLPIKAKSTQKILGINPGAHFGSAKRW
EASYFARVAKEFSSTHQILIFGVESEREICDEIEQFLLKEGIRAKNLCGKTSIYTLCKNISMLDLLITNDSGPMHIGAVY
GVKTVAVFGSTKFSQTSPWQENAKIAHLNLVCMPCMQKVCPLKHHKCMKDLKPDVVINLAKNFSGV

Nucleotide


Download         Length: 921 bp        

>NTDB_id=1123541 EL235_RS06155 WP_126341036.1 1203333..1204253(-) (waaF) [Campylobacter lari strain NCTC11937]
ATGAATATTTTTATCAACCTTCCTACTTGGCTTGGCGATGCGGTGATGGCTAGTGCGGCTATTTATGCTATAAAAGAAAA
GTATCCCCAAGCTAAATTTACTTTTTATGGTTCTTTTGTGAGTACAGAGCTTTTTAAACGCTTTGAAAATGCTCAAATTT
TAGTAGAAAATAAAAAACAAAGATATAAGCAAATTTTACAAGCTAGAAAAAACCTTGGTAAATTTGATCTAGCTTTTTCG
TTTCGCTCGGCATTTTCAAGTAAGATCATTTTAAATCTAATTAAAGCAAAAAAAAGATTTTATTTTGATAAAAATATTCT
AAAAGAAGAACATCAAGTCTTAAAGTACTTAAATTTCATAGAAAAAGCCTTAAATTTTAAAGCCACTTCAAATTCTTTAA
AACTCCCTATAAAAGCAAAATCAACTCAAAAAATTTTAGGTATAAATCCAGGTGCACATTTTGGAAGTGCTAAAAGATGG
GAGGCGAGTTATTTTGCAAGGGTAGCAAAAGAATTTAGCTCCACGCATCAAATTTTAATCTTTGGAGTAGAAAGTGAGAG
AGAAATTTGTGATGAAATTGAACAATTTCTTCTAAAAGAAGGCATAAGGGCAAAAAATCTTTGTGGTAAAACTAGCATTT
ATACTTTATGTAAAAATATTTCTATGCTTGATTTACTAATCACAAACGATAGTGGTCCTATGCATATAGGCGCAGTTTAT
GGAGTGAAAACGGTGGCTGTTTTTGGCTCTACTAAATTTAGTCAAACCTCACCTTGGCAAGAAAATGCTAAAATAGCACA
CTTAAATTTAGTTTGTATGCCTTGTATGCAAAAGGTCTGCCCTTTAAAACATCATAAATGTATGAAAGACTTAAAGCCTG
ATGTGGTAATAAATTTAGCAAAAAATTTTTCAGGAGTATAA

Domains

Predicted by InterproScan.

Glycosyltransferase family 9 (heptosyltransferase) (Glyco_transf_9)

(109-284)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  waaF Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

65.176

100

0.667

Multiple sequence alignment