Detailed information    

insolico Bioinformatically predicted

Overview

Name   ceuB   Type   Machinery gene
Locus tag   EL235_RS03920 Genome accession   NZ_LR134508
Coordinates   753661..754629 (-) Length   322 a.a.
NCBI ID   WP_232017408.1    Uniprot ID   -
Organism   Campylobacter lari strain NCTC11937     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 748661..759629
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EL235_RS03900 (NCTC11937_00781) - 748900..750942 (-) 2043 WP_321968542.1 TonB-dependent receptor domain-containing protein -
  EL235_RS03905 (NCTC11937_00782) - 750966..751895 (-) 930 WP_039626029.1 siderophore ABC transporter substrate-binding protein -
  EL235_RS03910 (NCTC11937_00783) - 751975..752736 (-) 762 WP_039626032.1 ABC transporter ATP-binding protein -
  EL235_RS03915 (NCTC11937_00784) - 752733..753668 (-) 936 WP_039626034.1 iron chelate uptake ABC transporter family permease subunit -
  EL235_RS03920 (NCTC11937_00785) ceuB 753661..754629 (-) 969 WP_232017408.1 ABC transporter permease Machinery gene
  EL235_RS03925 (NCTC11937_00786) flgA 755610..756278 (+) 669 WP_069106955.1 flagellar basal body P-ring formation chaperone FlgA -
  EL235_RS03930 (NCTC11937_00787) - 756275..756853 (+) 579 WP_126340847.1 UbiX family flavin prenyltransferase -
  EL235_RS03935 (NCTC11937_00788) coaD 756853..757332 (+) 480 WP_080750157.1 pantetheine-phosphate adenylyltransferase -
  EL235_RS03940 (NCTC11937_00789) tmk 757323..757907 (+) 585 WP_039626042.1 dTMP kinase -
  EL235_RS03945 (NCTC11937_00790) hisS 757900..759126 (+) 1227 WP_126340848.1 histidine--tRNA ligase -

Sequence

Protein


Download         Length: 322 a.a.        Molecular weight: 35869.72 Da        Isoelectric Point: 9.2495

>NTDB_id=1123533 EL235_RS03920 WP_232017408.1 753661..754629(-) (ceuB) [Campylobacter lari strain NCTC11937]
MMIKYLFGISFLIPTLIFLSLISLFVGVKDISIFNILSLTQEEKEILTIVRLPRLISIIITGMSLSICGLIMQQLTQNKF
VSPTTAGTMDCAKFGILICMLFFSGFNFIYQIFIAFIFTLIGSVIFIQILQKIKLKEIVFVPLIGLMFGGIINSITTFFA
YENNMIQNIQGWLQGNFSSIMIGNYEILFISIPIFIIAYFFANKITIVGMGKDVSLNLGISYNTILYIGLIIISIVVSIV
VLTIGVIPFLGLVIPNIVSIYKGDNLKAVLFYTAILGAVFLLVCDILSRTIIYPFEIPINLTVGIIGGILFVWILLRKKT
NA

Nucleotide


Download         Length: 969 bp        

>NTDB_id=1123533 EL235_RS03920 WP_232017408.1 753661..754629(-) (ceuB) [Campylobacter lari strain NCTC11937]
ATTATGATTAAATATTTATTTGGAATTAGTTTTTTAATACCTACATTAATATTTCTATCCTTGATTAGTCTTTTTGTAGG
CGTTAAAGATATTTCTATATTTAATATTCTATCTTTAACTCAAGAAGAAAAAGAAATTTTAACAATTGTTAGACTACCAA
GATTAATTTCCATTATCATTACTGGAATGAGCTTGAGTATATGCGGTTTGATTATGCAGCAACTTACTCAAAATAAATTT
GTATCTCCTACAACCGCAGGGACTATGGATTGTGCTAAATTTGGAATTTTAATTTGTATGTTATTTTTTAGTGGATTTAA
TTTTATTTATCAAATTTTTATAGCTTTTATTTTTACTCTTATTGGTAGTGTTATTTTTATCCAAATACTTCAAAAAATAA
AACTAAAAGAAATTGTTTTTGTTCCTTTGATTGGATTAATGTTTGGAGGTATTATTAACTCTATTACGACTTTTTTTGCT
TATGAAAACAATATGATACAAAATATTCAAGGCTGGCTACAAGGTAATTTTTCATCTATCATGATAGGAAATTATGAAAT
ATTATTTATTAGTATTCCTATTTTTATCATTGCATATTTTTTTGCTAATAAAATCACCATTGTTGGCATGGGTAAAGATG
TTTCCTTAAATTTGGGCATCTCATACAATACTATTTTATATATAGGGTTAATTATAATTTCCATTGTGGTTTCTATTGTG
GTTTTAACAATAGGAGTAATACCTTTTTTAGGTCTTGTTATACCAAACATAGTTTCAATATATAAAGGTGATAATTTAAA
AGCTGTTCTTTTTTATACCGCAATACTTGGAGCCGTGTTTTTATTAGTATGCGATATTTTATCAAGGACTATTATTTATC
CATTTGAAATTCCTATAAATTTAACCGTTGGCATTATTGGAGGTATTTTATTTGTTTGGATTTTACTAAGAAAGAAAACA
AATGCGTAA

Domains

Predicted by InterproScan.

FecCD transport family (FecCD)

(16-317)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ceuB Campylobacter jejuni subsp. jejuni 81-176

62.112

100

0.621

Multiple sequence alignment