Detailed information NTG1123531

Bioinformatically predicted

Overview

• Name: ctsD
• Type: Machinery gene
• Locus tag: EL235_RS01980
• Genome accession: NZ_LR134508
• Coordinates: 370796..372187 (+)
• Length: 463 a.a.
• NCBI ID: WP_126340702.1
• Uniprot ID: -
• Organism: Campylobacter lari strain NCTC11937
• Function: type II secretion system/type IV pilin; DNA uptake (predicted from homology) DNA binding and uptake

Genomic Context

Location: 365796..377187

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
EL235_RS01965 (NCTC11937_00394)	-	366181..366825 (+)	645	WP_039617658.1	HAD family hydrolase	-
EL235_RS01970 (NCTC11937_00395)	nifJ	366943..370497 (+)	3555	WP_126340700.1	pyruvate:ferredoxin (flavodoxin) oxidoreductase	-
EL235_RS01975 (NCTC11937_00396)	-	370564..370824 (+)	261	WP_126340701.1	hypothetical protein	-
EL235_RS01980 (NCTC11937_00397)	ctsD	370796..372187 (+)	1392	WP_126340702.1	pilus (MSHA type) biogenesis protein MshL	Machinery gene
EL235_RS01985 (NCTC11937_00398)	-	372168..372497 (+)	330	WP_126340703.1	hypothetical protein	-
EL235_RS01990 (NCTC11937_00399)	-	372490..374004 (+)	1515	WP_126340704.1	GspE/PulE family protein	-
EL235_RS01995 (NCTC11937_00400)	-	374001..375161 (+)	1161	WP_126340705.1	type II secretion system F family protein	-
EL235_RS02000 (NCTC11937_00401)	-	375158..375910 (-)	753	WP_126340706.1	TSUP family transporter	-
EL235_RS02005 (NCTC11937_00402)	-	375895..376644 (-)	750	WP_039625453.1	TIGR02757 family protein	-

Sequence

Protein

• Length: 463 a.a.
• Molecular weight: 52555.37 Da
• Isoelectric Point: 8.3792

>NTDB_id=1123531 EL235_RS01980 WP_126340702.1 370796..372187(+) (ctsD) [Campylobacter lari strain NCTC11937]
MKKIIFLFISVLTFTNVFASQCHQRFFDISVENKTSLIEILNELGRECGFSIIIKDSLAREKLNHTQNYLHIRKMSLREI
FKLLLMENNLAYEYEKNILKIYGRQVKTFKVHYISSIREGQSITKASVDSRPKQGDYDSTKEADNLVISTDKFDFWEKIS
EEIQALLDENTTKPIINTNAGIITLNATLYELTRVEKYLKDLNKRLKKQVLIDVSIVAVHLNKSHSSGINWQELAFKLNG
DDSDFIINKGGVRNINLKANVETKAILNLLQENGKTTVLSNPKLMALNNQQAIISIGDTINYQVKESSKGTENGTTISEA
YNNYSIFVGILLNILPEISDDHKIMLRINPSLSDFKYSVDNHRQNKPRNIAPDTIQKKLSTVVEVDDGQTLILGGLISKN
TISNHNEVSALSKIPLFGALFQGKQNLEDISEIVFIIKPSLIRADKKVLSLKELGFEHEDNMF

Nucleotide

• Length: 1392 bp

>NTDB_id=1123531 EL235_RS01980 WP_126340702.1 370796..372187(+) (ctsD) [Campylobacter lari strain NCTC11937]
ATGAAAAAAATAATATTTTTATTTATTAGTGTTTTAACTTTTACAAATGTTTTTGCTTCACAGTGTCATCAGCGCTTTTT
TGATATAAGCGTAGAAAATAAAACTTCTTTGATTGAAATTTTAAATGAACTTGGTAGAGAATGTGGTTTTAGCATTATAA
TAAAAGATTCATTAGCTAGAGAAAAGTTAAATCATACTCAAAATTATTTACACATAAGAAAAATGTCTTTAAGAGAAATT
TTTAAACTTTTATTGATGGAAAATAATCTTGCTTATGAATATGAAAAAAATATTTTAAAAATTTATGGAAGACAAGTTAA
AACTTTTAAAGTGCATTATATAAGTTCTATTAGAGAAGGGCAAAGTATCACCAAAGCTTCGGTTGATTCAAGACCTAAAC
AAGGTGATTATGATAGTACTAAAGAAGCAGATAATCTAGTCATTAGCACAGATAAATTTGATTTTTGGGAAAAAATTTCA
GAAGAAATACAAGCTTTATTAGATGAAAATACAACTAAGCCTATTATTAATACTAATGCAGGAATTATCACTTTAAATGC
TACTTTATATGAGCTTACAAGAGTTGAAAAATATCTAAAAGATTTAAATAAAAGACTTAAAAAGCAAGTTTTAATTGATG
TAAGTATAGTTGCTGTACATTTAAATAAAAGTCATTCAAGTGGGATTAACTGGCAAGAGCTTGCTTTTAAACTCAATGGA
GATGATAGTGATTTTATAATCAATAAAGGTGGTGTTAGAAATATCAATCTTAAAGCCAATGTTGAAACTAAAGCTATTTT
AAATTTATTACAAGAAAATGGCAAAACCACTGTGCTTTCTAACCCAAAACTCATGGCGCTTAATAATCAACAAGCTATTA
TTTCCATAGGTGATACGATTAATTATCAAGTAAAAGAAAGTTCCAAGGGCACTGAAAATGGTACGACCATTAGTGAAGCT
TATAATAATTATTCTATTTTTGTAGGAATTTTACTAAATATTTTACCTGAAATTTCAGATGATCATAAAATCATGCTTAG
AATTAATCCTAGTTTGAGTGATTTTAAATATAGTGTTGATAATCATAGACAAAATAAGCCAAGAAATATAGCACCTGATA
CCATACAAAAAAAGCTTTCTACTGTAGTTGAAGTTGATGATGGGCAAACTTTAATTTTGGGTGGATTAATTAGTAAAAAT
ACGATTAGTAATCATAACGAAGTAAGTGCTTTATCTAAAATACCACTTTTTGGAGCTTTATTTCAAGGAAAGCAAAATTT
AGAAGATATTAGCGAAATAGTTTTTATCATCAAGCCAAGTTTAATAAGAGCTGATAAAAAAGTATTAAGCTTAAAAGAAT
TAGGTTTTGAACATGAAGATAATATGTTTTAA

Domains

Predicted by InterproScan.

• Bacterial type II and III secretion system protein (Secretin) (269-443)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
ctsD	Campylobacter jejuni subsp. jejuni 81-176	56.41	100	0.57