Detailed information    

insolico Bioinformatically predicted

Overview

Name   Cj0683   Type   Machinery gene
Locus tag   EL229_RS03370 Genome accession   NZ_LR134505
Coordinates   639343..639780 (+) Length   145 a.a.
NCBI ID   WP_002852324.1    Uniprot ID   A0AA44HIV8
Organism   Campylobacter jejuni subsp. jejuni strain NCTC12109     
Function   initialization of DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 634343..644780
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EL229_RS08735 (NCTC12109_00680) - 634872..635987 (+) 1116 WP_223209780.1 sensor histidine kinase KdpD -
  EL229_RS08740 (NCTC12109_00681) - 636011..636655 (+) 645 WP_223209779.1 DUF4118 domain-containing protein -
  EL229_RS03355 (NCTC12109_00682) uvrB 636757..638730 (-) 1974 WP_002872078.1 excinuclease ABC subunit UvrB -
  EL229_RS03360 (NCTC12109_00683) - 638884..639114 (+) 231 WP_002852327.1 hypothetical protein -
  EL229_RS03365 (NCTC12109_00684) - 639104..639346 (+) 243 WP_002854947.1 hypothetical protein -
  EL229_RS03370 (NCTC12109_00685) Cj0683 639343..639780 (+) 438 WP_002852324.1 prepilin-type N-terminal cleavage/methylation domain-containing protein Machinery gene
  EL229_RS03375 (NCTC12109_00686) priA 639762..641615 (+) 1854 WP_002872079.1 primosomal protein N' -
  EL229_RS03380 cipA 641625..643020 (-) 1396 Protein_645 DUF2972 domain-containing protein -
  EL229_RS03385 (NCTC12109_00689) ispG 643166..644239 (+) 1074 WP_002854766.1 flavodoxin-dependent (E)-4-hydroxy-3-methylbut-2-enyl-diphosphate synthase -

Sequence

Protein


Download         Length: 145 a.a.        Molecular weight: 16765.76 Da        Isoelectric Point: 8.0993

>NTDB_id=1123478 EL229_RS03370 WP_002852324.1 639343..639780(+) (Cj0683) [Campylobacter jejuni subsp. jejuni strain NCTC12109]
MNKAFTLLELVFVILILGILSSLSLSFINTTKDEVKILKLKMDYEMLSSALALMRSQMRLKNLNFPEILDNAQNNQAKEK
LFYCLNDCDYSLLDTPIYSDFKSWIKIGKNHYRFALNAKEMVEFIYDSKEGLLKCIGSSRCKDLI

Nucleotide


Download         Length: 438 bp        

>NTDB_id=1123478 EL229_RS03370 WP_002852324.1 639343..639780(+) (Cj0683) [Campylobacter jejuni subsp. jejuni strain NCTC12109]
ATGAATAAAGCTTTTACTCTGCTTGAGCTTGTTTTTGTGATTTTGATTTTGGGAATTTTATCAAGCTTATCTTTATCTTT
TATCAATACTACAAAAGATGAGGTTAAAATTTTAAAATTAAAAATGGACTATGAAATGCTAAGCTCAGCTCTTGCTTTAA
TGCGTAGTCAAATGAGACTTAAAAATTTAAATTTTCCAGAAATTTTAGATAATGCACAAAACAATCAAGCCAAAGAAAAA
CTCTTTTATTGTTTAAATGATTGTGATTATTCTTTGCTTGATACACCTATTTATTCTGATTTTAAATCTTGGATAAAAAT
AGGTAAAAATCACTATAGATTTGCATTAAACGCCAAAGAGATGGTTGAATTTATTTATGATTCTAAAGAAGGTTTGTTAA
AGTGTATAGGAAGTTCTAGATGCAAAGATCTGATATAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(2-23)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  Cj0683 Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

100

100

1

Multiple sequence alignment